LOCUS BC017096 2081 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens alkB, alkylation repair homolog 4 (E. coli), mRNA
(cDNA clone MGC:12618 IMAGE:2820440), complete cds.
ACCESSION BC017096
VERSION BC017096.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2081)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2081)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-NOV-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 18 Row: a Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 20070290.
FEATURES Location/Qualifiers
source 1..2081
/db_xref="H-InvDB:HIT000037835"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12618 IMAGE:2820440"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2081
/gene="ALKBH4"
/gene_synonym="FLJ20013"
/db_xref="GeneID:54784"
/db_xref="HGNC:HGNC:21900"
CDS 6..914
/gene="ALKBH4"
/gene_synonym="FLJ20013"
/codon_start=1
/product="alkB, alkylation repair homolog 4 (E. coli)"
/protein_id="AAH17096.1"
/db_xref="GeneID:54784"
/db_xref="HGNC:HGNC:21900"
/translation="MAAAAAETPEVLRECGCKGIRTCLICERQRGSDPPWELPPAKTY
RFIYCSDTGWAVGTEESDFEGWAFPFPGVMLIEDFVTREEEAELVRLMDRDPWKLSQS
GRRKQDYGPKVNFRKQKLKTEGFCGLPSFSREVVRRMGLYPGLEGFRPVEQCNLDYCP
ERGSAIDPHLDDAWLWGERLVSLNLLSPTVLSMCREAPGSLLLCSAPSAAPEALVDSV
IAPSRSVLCQEVEVAIPLPARSLLVLTGAARHQWKHAIHRRHIEARRVCVTFRELSAE
FGPGGRQQELGQELLRIALSFQGRPV"
BASE COUNT 469 a 577 c 626 g 409 t
ORIGIN
1 gcgcgatggc ggcggctgcc gccgagaccc ccgaagtcct tcgggaatgc ggttgcaagg
61 gcatccggac ctgtctgatc tgcgagcggc agcgcggcag tgacccgccc tgggagctgc
121 ccccagcgaa aacataccgt ttcatttact gctccgacac cggctgggcc gtgggcacag
181 aggagtctga ctttgagggc tgggccttcc ccttcccagg agtgatgctg atcgaggact
241 ttgtgacccg ggaggaagaa gccgagttgg tgcggctcat ggaccgtgac ccctggaagc
301 tctcccagtc tggacggagg aagcaggact atggccccaa agtcaacttt cggaaacaga
361 agctaaagac cgagggcttc tgcggcctcc ccagcttcag ccgggaggtg gtgcggagga
421 tgggcctcta cccggggctg gagggcttcc ggcccgtcga gcagtgcaac ctggactact
481 gccccgagcg gggctctgcc attgaccccc acctggacga cgcctggctg tggggggagc
541 ggctggtcag cctcaacctc ctgtccccca ccgtgctgtc catgtgtcgg gaggcgcccg
601 ggagcctgct cctctgctcg gccccgtcgg ctgccccgga ggccttggtg gacagcgtga
661 tagcacccag ccggtcggtg ctatgccagg aggtggaggt ggccatcccc ttacccgccc
721 gctccctgct ggtcctcacc ggggcggcac ggcaccagtg gaagcatgcc atccaccgca
781 gacacatcga ggcccgccgc gtctgcgtca ctttccggga gctgtcggct gagtttggcc
841 ctggagggag gcagcaagag ctgggccagg aactgctgcg gatcgccctc tccttccagg
901 gaagacccgt gtgaaccgcc tccttggctc cagacttgac tgatcccggg attgaaatga
961 ggagcacaga acagggcctc ctgcaactca cggggtttca agagaagatg gctgacccct
1021 gatgctgtga gcagtgtgag ccctgcccag gagcaggttt tgatgggaac gtacctccag
1081 gcagccccct tccacctgga ccgtggccac acttttttgg ttatttagtt tgtcacagtc
1141 ttggggacat gggatcattt gagcttaaaa aatactgggg gccgggcaca gtggctcaca
1201 cctgtaatcc taacactttg ggaggctgag gtgggcggat cacttgatgc caggagttcg
1261 agaccagcct ggccaacacg gtgaaaaccc gtctctacaa aaactacaaa aattagccgg
1321 gtgtggtgac tcacagccgt aatcccagct actcgggagg ctaaggtggg agaattgctt
1381 gaacctggga ggcggaggtt gcagtgagcc aagatcacgc cactgcactc cagcctcggt
1441 gacagagcaa gactgttttg aaaaaaaaaa aaaatgggaa cattttaaat gattttcacc
1501 tttattatgc atctattttc atggggtttc ccgatatctc actgtccagt cccttcattt
1561 ggggaatgtg ttggattagg gaacagggtt gaagatttga agtttagact aaagagctgg
1621 gaacagcttc agagtcaggc tcagcctgac tcatgcttga cacccccacg cccagggagg
1681 gttgggggat gtgaggaggg cagggaaatc tgagagcctc cttccagccc cataacgctg
1741 ttaacaagta ggaaaaatta aagctcccgg ccaggcgcgg tgactcacac ctgtaatccg
1801 agtactttgc ggggctcagg tgggaggatt gcttgaggcc agcctgggca acatagtgag
1861 acccccatct ctacaaaaaa tacaaacatt agctgggcgt ctgggcatgg tggcacacac
1921 ctgtagtccc agctactcga aaggctgagg cgggaggatg gctttaccac catgtcaagg
1981 ctgcagtgag ctcatgatca taccactgca cttaacttgg caacagagca agaccctgtc
2041 cctaaaataa ataaaaggaa aacaaaaaaa aaaaaaaaaa a
//