LOCUS BC017078 1202 bp mRNA linear HUM 30-SEP-2003
DEFINITION Homo sapiens SET domain, bifurcated 2, mRNA (cDNA clone
IMAGE:3847827), partial cds.
ACCESSION BC017078
VERSION BC017078.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1202)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1202)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (05-NOV-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 20 Row: j Column: 21.
FEATURES Location/Qualifiers
source 1..1202
/db_xref="H-InvDB:HIT000089180"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3847827"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_65"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..1202
/gene="SETDB2"
/gene_synonym="C13orf4"
/gene_synonym="CLLD8"
/gene_synonym="CLLL8"
/db_xref="GeneID:83852"
/db_xref="MIM:607865"
CDS <1..868
/gene="SETDB2"
/gene_synonym="C13orf4"
/gene_synonym="CLLD8"
/gene_synonym="CLLL8"
/codon_start=2
/product="SETDB2 protein"
/protein_id="AAH17078.1"
/db_xref="GeneID:83852"
/db_xref="MIM:607865"
/translation="LEVACSDCEVEVLPLGLETHPRTAKTEKCPPKFSNNPKELTVET
KYDNISRIQYHSVIRDPESKTAIFQHNGKKMEFVSSESVTPEDNDGFKPPREHLNSKT
KGAQKDSSSNHVDEFEDNLLIESDVIDITKYREETPPRSRCNQATTLDNQNIKKAIEV
QIQKPQEGRSTACQRQQVFCDEELLSETKNTSSDSLTKFNKGNVFLLDATKEGNVGRF
LNHSCCPNLLVQNVFVETHNRNFPLVAFFTNRYVKARTELTWDYGYEAGTVPEKEIFC
QCGVNKCRKKIL"
misc_feature 596..796
/gene="SETDB2"
/gene_synonym="C13orf4"
/gene_synonym="CLLD8"
/gene_synonym="CLLL8"
/note="SET; Region: SET domain. SET domains appear to be
protein-protein interaction domains. It has been
demonstrated that SET domains mediate interactions with a
family of proteins that display similarity with
dual-specificity phosphatases (dsPTPases). A subset of SET
domains have been called PR domains. These domains are
divergent in sequence from other SET domains, but also
appear to mediate protein-protein interaction"
/db_xref="CDD:pfam00856"
BASE COUNT 435 a 194 c 234 g 339 t
ORIGIN
1 attagaagtt gcatgttcag attgtgaagt tgaagttctc ccattaggat tggaaacaca
61 tcctagaact gctaaaactg agaaatgtcc accaaagttc agtaataatc ccaaggagct
121 tactgtggaa acgaaatatg ataatatttc aagaattcaa tatcattcag ttattagaga
181 tcctgaatcc aagacagcca tttttcaaca caatgggaaa aaaatggaat ttgtttcctc
241 ggagtctgtc actccagaag ataatgatgg atttaaacca ccccgagagc atctgaactc
301 taaaaccaag ggagcacaaa aggactcaag ttcaaaccat gttgatgagt ttgaagataa
361 tctgctgatt gaatcagatg tgatagatat aactaaatat agagaagaaa ctccaccaag
421 gagcagatgt aaccaggcga ccacattgga taatcagaat attaaaaagg caattgaggt
481 tcaaattcag aaaccccaag agggacgatc tacagcatgt caaagacagc aggtattttg
541 tgatgaagag ttgctaagtg aaaccaagaa tacttcatct gattctctaa caaagttcaa
601 taaagggaat gtgtttttat tggatgccac aaaagaagga aatgtcggcc gcttccttaa
661 tcatagttgt tgcccaaatc tcttggtaca gaatgttttt gtagaaacac acaacaggaa
721 ttttccattg gtggcattct tcaccaacag gtatgtgaaa gcaagaacag agctaacatg
781 ggattatggc tatgaagctg ggactgtgcc tgagaaggaa atcttctgcc aatgtggggt
841 taataaatgt agaaaaaaaa tattataaat atgtaactaa cgcctgtttg tgaaattagc
901 ttatcaggct gaaattaaag ccatgcaaaa gaaggtctag gtccatcaag gaaattcccc
961 tccgttttcc tttgtcatgg ggtttatgtt ttatttcaga ttttatttgt gtgacttaga
1021 aattccagga acacaattag gatattttca tacacatagg gtatcttgtt cactgctgtg
1081 ctactttaca tgagtaggat ggaagtgtat attttatatg aaataccact gtacaattta
1141 taatttattt acaaattata tattaagaga aacaaatgtc ataacagaaa aaaaaaaaaa
1201 aa
//