LOCUS BC017059 2709 bp mRNA linear HUM 01-SEP-2006
DEFINITION Homo sapiens interferon, gamma-inducible protein 16, mRNA (cDNA
clone MGC:9466 IMAGE:3914632), complete cds.
ACCESSION BC017059
VERSION BC017059.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2709)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2709)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-NOV-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 22 Row: n Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 5031778.
FEATURES Location/Qualifiers
source 1..2709
/db_xref="H-InvDB:HIT000037815"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9466 IMAGE:3914632"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2709
/gene="IFI16"
/gene_synonym="IFNGIP1"
/gene_synonym="MGC9466"
/gene_synonym="PYHIN2"
/db_xref="GeneID:3428"
/db_xref="HGNC:HGNC:5395"
/db_xref="MIM:147586"
CDS 258..2447
/gene="IFI16"
/gene_synonym="IFNGIP1"
/gene_synonym="MGC9466"
/gene_synonym="PYHIN2"
/codon_start=1
/product="interferon, gamma-inducible protein 16"
/protein_id="AAH17059.1"
/db_xref="GeneID:3428"
/db_xref="HGNC:HGNC:5395"
/db_xref="MIM:147586"
/translation="MGKKYKNIVLLKGLEVINDYHFRMVKSLLSNDLKLNLKMREEYD
KIQIADLMEEKFRGDAGLGKLIKIFEDIPTLEDLAETLKKEKLKVKGPALSRKRKKEV
DATSPAPSTSSTVKTEGAEATPGAQKRKKSTKEKAGPKGSKVSEEQTQPPSPAGAGMS
TAMGRSPSPKTSLSAPPNTSSTENPKTVAKCQVTPRRNVLQKRPVIVKVLSTTKPFEY
ETPEMEKKIMFHATVATQTQFFHVKVLNTSLKEKFNGKKIIIISDYLEYDSLLEVNEE
STVSEAGPNQTFEVPNKIINRAKETLKIDILHKQASGNIVYGVFMLHKKTVNQKTTIY
EIQDDRGKMDVVGTGQCHNIPCEEGDKLQLFCFRLRKKNQMSKLISEMHSFIQIKKKT
NPRNNDPKSMKLPQEQSQLPNPSEASTTFPESHLRTPQMPPTTPSSSFFTKKSEDTIS
KMNDFMRMQILKEGSHFPGPFMTSIGPAESHPHTPQMPPSTPSSSFLTTLKPRLKTEP
EEVSIEDSAQSDLKEVMVLNATESFVYEPKEQKKMFHATVATENEVFRVKVFNIDLKE
KFTPKKIIAIANYVCRNGFLEVYPFTLVADVNADRNMEIPKGLIRSASVTPKINQLCS
QTKGSFVNGVFEVHKKNVRGEFTYYEIQDNTGKMEVVVHGRLTTINCEEGDKLKLTCF
ELAPKSGNTGELRSVIHSHIKVIKTRKNKKDILNPDSSMETSPDFFF"
BASE COUNT 964 a 541 c 544 g 660 t
ORIGIN
1 gcagaatagg agcaagccag cactagtcag ctaactaagt gactcaacca aggccttttt
61 tccttgttat ctttgcagat acttcatttt cttagcgttt ctggagatta caacatcctg
121 cggttccgtt tctgggaact ttactgattt atctcccccc tcacacaaat aagcattgat
181 tcctgcattt ctgaagatct caagatctgg actactgttg aaaaaatttc cagtgaggct
241 cacttatgtc tgtaaagatg ggaaaaaaat acaagaacat tgttctacta aaaggattag
301 aggtcatcaa tgattatcat tttagaatgg ttaagtcctt actgagcaac gatttaaaac
361 ttaatttaaa aatgagagaa gagtatgaca aaattcagat tgctgacttg atggaagaaa
421 agttccgagg tgatgctggt ttgggcaaac taataaaaat tttcgaagat ataccaacgc
481 ttgaagacct ggctgaaact cttaaaaaag aaaagttaaa agtaaaagga ccagccctat
541 caagaaagag gaagaaggaa gtggatgcta cttcacctgc accctccaca agcagcactg
601 tcaaaactga aggagcagag gcaactcctg gagctcagaa aagaaaaaaa tcaaccaaag
661 aaaaggctgg acccaaaggg agtaaggtgt ccgaggaaca gactcagcct ccctctcctg
721 caggagccgg catgtccaca gccatgggcc gttccccatc tcccaagacc tcattgtcag
781 ctccacccaa cacttcttca actgagaacc cgaaaacagt ggccaaatgt caggtaactc
841 ccagaagaaa tgttctccaa aaacgcccag tgatagtgaa ggtactgagt acaacaaagc
901 catttgaata tgagacccca gaaatggaga aaaaaataat gtttcatgct acagtggcta
961 cacagacaca gttcttccat gtgaaggttt taaacaccag cttgaaggag aaattcaatg
1021 gaaagaaaat catcatcata tcagattatt tggaatatga tagtctccta gaggtcaatg
1081 aagaatctac tgtatctgaa gctggtccta accaaacgtt tgaggttcca aataaaatca
1141 tcaacagagc aaaggaaact ctgaagattg atattcttca caaacaagct tcaggaaata
1201 ttgtatatgg ggtatttatg ctacataaga aaacagtaaa tcagaagacc acaatctacg
1261 aaattcagga tgatagagga aaaatggatg tagtggggac aggacaatgt cacaatatcc
1321 cctgtgaaga aggagataag ctccaacttt tctgctttcg acttagaaaa aagaaccaga
1381 tgtcaaaact gatttcagaa atgcatagtt ttatccagat aaagaaaaaa acaaacccga
1441 gaaacaatga ccccaagagc atgaagctac cccaggaaca gagtcagctt ccaaatcctt
1501 cagaggccag cacaaccttc cctgagagcc atcttcggac tcctcagatg ccaccaacaa
1561 ctccatccag cagtttcttc accaagaaaa gtgaagacac aatctccaaa atgaatgact
1621 tcatgaggat gcagatactg aaggaaggga gtcattttcc aggaccgttc atgaccagca
1681 taggcccagc tgagagccat ccccacactc ctcagatgcc tccatcaaca ccaagcagca
1741 gtttcttaac cacgttgaaa ccaagactga agactgaacc tgaagaagtt tccatagaag
1801 acagtgccca gagtgacctc aaagaagtga tggtgctgaa cgcaacagaa tcatttgtat
1861 atgagcccaa agagcagaag aaaatgtttc atgccacagt ggcaactgag aatgaagtct
1921 tccgagtgaa ggtttttaat attgacctaa aggagaagtt caccccaaag aagatcattg
1981 ccatagcaaa ttatgtttgc cgcaatgggt tcctggaggt atatcctttc acacttgtgg
2041 ctgatgtgaa tgctgaccga aacatggaga tcccaaaagg attgattaga agtgccagcg
2101 taactcctaa aatcaatcag ctttgctcac aaactaaagg aagttttgtg aatggggtgt
2161 ttgaggtaca taagaaaaat gtaaggggtg aattcactta ttatgaaata caagataata
2221 cagggaagat ggaagtggtg gtgcatggac gactgaccac aatcaactgt gaggaaggag
2281 ataaactgaa actcacctgc tttgaattgg caccgaaaag tgggaatacc ggggagttga
2341 gatctgtaat tcatagtcac atcaaggtca tcaagaccag gaaaaacaag aaagacatac
2401 tcaatcctga ttcaagtatg gaaacttcac cagacttttt cttctaaaat ctggatgtca
2461 ttgacgataa tgtttatgga gataaggtct aagtgcctaa aaaaatgtac atatacctgg
2521 ttgaaataca acactataca tacacaccac catatatact agctgttaat cctatggaat
2581 ggggtattgg gagtgctttt ttaatttttc atagtttttt tttaataaaa tggcatattt
2641 tgcatctaca acttctataa tttgaaaaaa taaataaaca ttatcttttt tgtgaaaaaa
2701 aaaaaaaaa
//