LOCUS BC017052 1741 bp mRNA linear HUM 01-SEP-2006
DEFINITION Homo sapiens vesicle transport through interaction with t-SNAREs
homolog 1A (yeast), mRNA (cDNA clone MGC:9292 IMAGE:3885564),
complete cds.
ACCESSION BC017052
VERSION BC017052.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1741)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1741)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-NOV-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP/Gazdar
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 22 Row: c Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21624647.
FEATURES Location/Qualifiers
source 1..1741
/db_xref="H-InvDB:HIT000037809"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9292 IMAGE:3885564"
/tissue_type="Lung, large cell carcinoma"
/clone_lib="NIH_MGC_68"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1741
/gene="VTI1A"
/gene_synonym="MVti1"
/gene_synonym="Vti1-rp2"
/db_xref="GeneID:143187"
/db_xref="HGNC:HGNC:17792"
CDS 117..728
/gene="VTI1A"
/gene_synonym="MVti1"
/gene_synonym="Vti1-rp2"
/codon_start=1
/product="VTI1A protein"
/protein_id="AAH17052.1"
/db_xref="GeneID:143187"
/db_xref="HGNC:HGNC:17792"
/translation="MSSDFEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQ
LEEAKELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAYSDEVRNE
LLGDDGNSSENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKI
QRARERLRETDANLGKSSRILTGMLRRGCSVKKQCNLSLAPKA"
BASE COUNT 498 a 384 c 432 g 427 t
ORIGIN
1 ccgttctgct ctcgggggca ccttccgggg ttcctaagcc gcggggcccc tcgctgcccc
61 tcgaggccct ttccctgacc taggctttgg cctgggctac tcgttccgga gccgccatgt
121 cgtccgactt cgaaggttac gagcaggact tcgcggtgct cactgcagag atcaccagca
181 agattgcgag ggtcccacga ctcccgcctg atgaaaagaa acagatggtt gcaaatgtgg
241 agaaacagct tgaagaagcg aaagaactgc ttgaacagat ggatttggaa gtccgagaga
301 taccacccca aagtcgaggg atgtacagca acagaatgag aagctacaaa caagaaatgg
361 gaaaactcga aacagatttt aaaaggtcac ggatcgccta cagtgacgaa gtacggaatg
421 agctcctggg ggatgatggg aattcctcag agaaccagag ggcacatctg ctcgataaca
481 cagagaggct ggaaaggtca tctcggagac tagaggctgg ataccaaata gcagtggaaa
541 ccgagcaaat tggtcaggag atgttggaaa accttagtca tgacagagaa aagatacagc
601 gagcacgtga aagacttcgg gaaacagatg ctaatttggg aaaaagctcc aggattctga
661 cagggatgtt gcgaaggggt tgttctgtga aaaaacaatg taacctgtct ctggccccaa
721 aggcttgaac cagaaccagc cagtggaaat tactcaaaca cgtattgtgc cttcaatgag
781 aagccttctc actgaaagag ctgccctgga cggaaaatga gtagtgagat gatgctggtg
841 gaagtattta tagatgcgca gtgcatgagt acttggcaag gatgctatca aaggggaaac
901 tgacatcaaa tgtgctgtgg ttctgggtga tttatctggt cccttcccat cccagagctt
961 tatgattctg taataatcaa gggagaaacc cattacatag tggacaattt tttttctttt
1021 tttttctttt tctttttttt tttgagacag agtcttgccc tgtcgcctgg ctggagtgga
1081 gtggcacaat cttggctcac tgcaacctcc acctcccagg tccaagcgat tctcttgcct
1141 cagcctccca agtagctggg actacaggca cacaccacca cgcccagcta atttttgtat
1201 ttcttttttt tttttttgta gagatggagt ttcaccatgt tggccaggat ggtctcgatc
1261 tcttaacctt gtgagccacc gtgcccaacc ctaacaatta tttttaaaag gaggaattta
1321 aatgagctgt ggattattca ttttgtccca taagaagata attaaaaaat gacaaaaatg
1381 aactgaacaa aaaagttcta acaaaataat aaggctgaat ttttaaagtc tcttccgcat
1441 cttctgttcc ctgggatgcc ttagacgggg tgtgcagtat tttaggtaca tcgtgagcaa
1501 ggagcctgca ttcccagggg gcggcaggga cagcatgtaa ggtcttagtc cagctctgtg
1561 atctgaaggc aaagcctcta tgtgtgaaac acaggggtac ctcaaaaata gaacaagagc
1621 actccatcca tgtgcggatg actgtcaagg tcactgagac ctacagtgat ctggaaaatt
1681 aaagctctct ggccgccttt cctctcagga catacttctg gagatcaaaa aaaaaaaaaa
1741 a
//