LOCUS BC016671 2079 bp mRNA linear HUM 04-NOV-2003 DEFINITION Homo sapiens integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor), mRNA (cDNA clone IMAGE:4342576), partial cds. ACCESSION BC016671 VERSION BC016671.2 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2079) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2079) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (31-OCT-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 25, 2003 this sequence version replaced BC016671.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Lou Staudt cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 26 Row: k Column: 14 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 6006032. FEATURES Location/Qualifiers source 1..2079 /db_xref="H-InvDB:HIT000089023" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:4342576" /tissue_type="Lymph, lymphoma" /clone_lib="NIH_MGC_85" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..>2079 /gene="ITGA4" /gene_synonym="CD49d" /db_xref="GeneID:3676" /db_xref="MIM:192975" CDS 229..>2079 /gene="ITGA4" /gene_synonym="CD49d" /codon_start=1 /product="ITGA4 protein" /protein_id="AAH16671.1" /db_xref="GeneID:3676" /db_xref="MIM:192975" /translation="MAWEARREPGPRRAAVRETVMLLLCLGVPTGRPYNVDTESALLY QGPHNTLFGYSVVLHSHGANRWLLVGAPTANWLANASVINPGAIYRCRIGKNPGQTCE QLQLGSPNGEPCGKTCLEERDNQWLGVTLSRQPGENGSIVTCGHRWKNIFYIKNENKL PTGGCYGVPPDLRTELSKRIAPCYQDYVKKFGENFASCQAGISSFYTKDLIVMGAPGS SYWTGSLFVYNITTNKYKAFLDKQNQVKFGSYLGYSVGAGHFRSQHTTEVVGGAPQHE QIGKAYIFSIDEKELNILHEMKGKKLGSYFGASVCAVDLNADGFSDLLVGAPMQSTIR EEGRVFVYINSGSGAVMNAMETNLVGSDKYAARFGESIVNLGDIDNDGFEDVAIGAPQ EDDLQGAIYIYNGRADGISSTFSQRIEGLQISKSLSMFGQSISGQIDADNNGYVDVAV GAFRSDSAVLLRTRPVVIVDASLSHPESVNRTKFDCVENGWPSVCIDLTLCFSYKGKE VPGYIVLFYNMSLDVNRKAESPPRFYFSSNGTSDVITGSIQVSSREANCRTHQAFMRK DVRDILTPIQIEAAYHLGPHVISKRSTEEFPPLQPILQQKKEKDIMKKKKK" misc_feature 1135..1272 /gene="ITGA4" /gene_synonym="CD49d" /note="Int_alpha; Region: Integrin alpha (beta-propellor repeats)" /db_xref="CDD:smart00191" misc_feature 1321..1476 /gene="ITGA4" /gene_synonym="CD49d" /note="Int_alpha; Region: Integrin alpha (beta-propellor repeats)" /db_xref="CDD:smart00191" misc_feature 1510..1596 /gene="ITGA4" /gene_synonym="CD49d" /note="Int_alpha; Region: Integrin alpha (beta-propellor repeats)" /db_xref="CDD:smart00191" BASE COUNT 571 a 462 c 527 g 519 t ORIGIN 1 tccgggagtg gggccgggcg agtgcgcggc atcccaggcc ggcccgaacg ctccgcccgc 61 ggtgggccga cttcccctcc tcttccctct ctccttcctt tagcccgctg gcgccggaca 121 cgctgcgcct catctcttgg ggcgttcttc cccgttggcc aaccgtcgca tcccgtgcaa 181 ctttggggta gtggccgttt agtgttgaat gttccccacc gagagcgcat ggcttgggaa 241 gcgaggcgcg aacccggccc ccgaagggcc gccgtccggg agacggtgat gctgttgctg 301 tgcctggggg tcccgaccgg ccgcccctac aacgtggaca ctgagagcgc gctgctttac 361 cagggccccc acaacacgct gttcggctac tcggtcgtgc tgcacagcca cggggcgaac 421 cgatggctcc tagtgggtgc gcccactgcc aactggctcg ccaacgcttc agtgatcaat 481 cccggggcga tttacagatg caggatcgga aagaatcccg gccagacgtg cgaacagctc 541 cagctgggta gccctaatgg agaaccttgt ggaaagactt gtttggaaga gagagacaat 601 cagtggttgg gggtcacact ttccagacag ccaggagaaa atggatccat cgtgacttgt 661 gggcatagat ggaaaaatat attttacata aagaatgaaa ataagctccc cactggtggt 721 tgctatggag tgccccctga tttacgaaca gaactgagta aaagaatagc tccgtgttat 781 caagattatg tgaaaaaatt tggagaaaat tttgcatcat gtcaagctgg aatatccagt 841 ttttacacaa aggatttaat tgtgatgggg gccccaggat catcttactg gactggctct 901 ctttttgtct acaatataac tacaaataaa tacaaggctt ttttagacaa acaaaatcaa 961 gtaaaatttg gaagttattt aggatattca gtcggagctg gtcattttcg gagccagcat 1021 actaccgaag tagtcggagg agctcctcaa catgagcaga ttggtaaggc atatatattc 1081 agcattgatg aaaaagaact aaatatctta catgaaatga aaggtaaaaa gcttggatcg 1141 tactttggag cttctgtctg tgctgtggac ctcaatgcag atggcttctc agatctgctc 1201 gtgggagcac ccatgcagag caccatcaga gaggaaggaa gagtgtttgt gtacatcaac 1261 tctggctcgg gagcagtaat gaatgcaatg gaaacaaacc tcgttggaag tgacaaatat 1321 gctgcaagat ttggggaatc tatagttaat cttggcgaca ttgacaatga tggctttgaa 1381 gatgttgcta tcggagctcc acaagaagat gacttgcaag gtgctattta tatttacaat 1441 ggccgtgcag atgggatctc gtcaaccttc tcacagagaa ttgaaggact tcagatcagc 1501 aaatcgttaa gtatgtttgg acagtctata tcaggacaaa ttgatgcaga taataatggc 1561 tatgtagatg tagcagttgg tgcttttcgg tctgattctg ctgtcttgct aaggacaaga 1621 cctgtagtaa ttgttgacgc ttctttaagc caccctgagt cagtaaatag aacgaaattt 1681 gactgtgttg aaaatggatg gccttctgtg tgcatagatc taacactttg tttctcatat 1741 aagggcaagg aagttccagg ttacattgtt ttgttttata acatgagttt ggatgtgaac 1801 agaaaggcag agtctccacc aagattctat ttctcttcta atggaacttc tgacgtgatt 1861 acaggaagca tacaggtgtc cagcagagaa gctaactgta gaacacatca agcatttatg 1921 cggaaagatg tgcgggacat cctcacccca attcagattg aagctgctta ccaccttggt 1981 cctcatgtca tcagtaaacg aagtacagag gaattcccac cacttcagcc aattcttcag 2041 cagaagaaag aaaaagacat aatgaaaaaa aaaaaaaaa //