LOCUS BC016665 2987 bp mRNA linear HUM 11-SEP-2007
DEFINITION Homo sapiens thymocyte selection-associated high mobility group
box, mRNA (cDNA clone MGC:17141 IMAGE:4342384), complete cds.
ACCESSION BC016665
VERSION BC016665.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2987)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2987)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 26 Row: k Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 51477724.
FEATURES Location/Qualifiers
source 1..2987
/db_xref="H-InvDB:HIT000037623"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17141 IMAGE:4342384"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2987
/gene="TOX"
/gene_synonym="TOX1"
/db_xref="GeneID:9760"
/db_xref="HGNC:HGNC:18988"
/db_xref="MIM:606863"
CDS 65..1645
/gene="TOX"
/gene_synonym="TOX1"
/codon_start=1
/product="thymocyte selection-associated high mobility
group box"
/protein_id="AAH16665.1"
/db_xref="GeneID:9760"
/db_xref="HGNC:HGNC:18988"
/db_xref="MIM:606863"
/translation="MDVRFYPPVAQPAAAPDAPCLGPSPCLDPYYCNKFDGENMYMSM
TEPSQDYVPASQSYPGPSLESEDFNIPPITPPSLPDHSLVHLNEVESGYHSLCHPMNH
NGLLPFHPQNMDLPEITVSNMLGQDGTLLSNSISVMPDIRNPEGTQYSSHPQMAAMRP
RGQPADIRQQPGMMPHGQLTTINQSQLSAQLGLNMGGSNVPHNSPSPPGSKSATPSPS
SSVHEDEGDDTSKINGGEKRPASDMGKKPKTPKKKKKKDPNEPQKPVSAYALFFRDTQ
AAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYRASLVS
KSYSEPVDVKTSQPPQLINSKPSVFHGPSQAHSALYLSSHYHQQPGMNPHLTAMHPSL
PRNIAPKPNNQMPVTVSIANMAVSPPPPLQISPPLHQHLNMQQHQPLTMQQPLGNQLP
MQVQSALHSPTMQQGFTLQPDYQTIINPTSTAAQVVTQAMEYVRSGCRNPPPQPVDWN
NDYCSSGGMQRDKALYLT"
BASE COUNT 876 a 703 c 570 g 838 t
ORIGIN
1 gttttgctga acactttttt ttaaaaaagg aaaaagaaaa ggagttgctt gatgtgagag
61 tgaaatggac gtaagatttt atccacctgt agcccagccc gccgctgcgc ccgacgctcc
121 ctgtctggga ccttctccct gcctggaccc ctactattgc aacaagtttg acggtgagaa
181 catgtatatg agcatgacag agccgagcca ggactatgtg ccagccagcc agtcctaccc
241 tggtccaagc ctggaaagtg aagacttcaa cattccacca attactcctc cttccctccc
301 agaccactcg ctggtgcacc tgaatgaagt tgagtctggt taccattctc tgtgtcaccc
361 catgaaccat aatggcctgc taccatttca tccacaaaac atggacctcc ctgaaatcac
421 agtctccaat atgctgggcc aggatggaac actgctttct aattccattt ctgtgatgcc
481 agatatacga aacccagaag gaactcagta cagttcccat cctcagatgg cagccatgag
541 accaaggggc cagcctgcag acatcaggca gcagccagga atgatgccac atggccagct
601 gactaccatt aaccagtcac agctaagtgc tcaacttggt ttgaatatgg gaggaagcaa
661 tgttccccac aactcaccat ctccacctgg aagcaagtct gcaactcctt caccatccag
721 ttcagtgcat gaagatgaag gcgatgatac ctctaagatc aatggtggag agaagcggcc
781 tgcctctgat atggggaaaa aaccaaaaac tcccaaaaag aagaagaaga aggatcccaa
841 tgagccccag aagcctgtgt ctgcctatgc gttattcttt cgtgatactc aggccgccat
901 caagggccaa aatccaaacg ctacctttgg cgaagtctct aaaattgtgg cttcaatgtg
961 ggacggttta ggagaagagc aaaaacaggt ctataaaaag aaaaccgagg ctgcgaagaa
1021 ggagtacctg aagcaactcg cagcatacag agccagcctt gtatccaaga gctacagtga
1081 acctgttgac gtgaagacat ctcaacctcc tcagctgatc aattcgaagc cgtcggtgtt
1141 ccatgggccc agccaggccc actcggccct gtacctaagt tcccactatc accaacaacc
1201 gggaatgaat cctcacctaa ctgccatgca tcctagtctc cccaggaaca tagcccccaa
1261 gccgaataac caaatgccag tgactgtctc tatagcaaac atggctgtgt cccctcctcc
1321 tcccctccag atcagcccgc ctcttcacca gcatctcaac atgcagcagc accagccgct
1381 caccatgcag cagccccttg ggaaccagct ccccatgcag gtccagtctg ccttacactc
1441 acccaccatg cagcaaggat ttactcttca acccgactat cagactatta tcaatcctac
1501 atctacagct gcacaagttg tcacccaggc aatggagtat gtgcgttcgg ggtgcagaaa
1561 tcctccccca caaccggtgg actggaataa cgactactgc agtagtgggg gcatgcagag
1621 ggacaaagca ctgtacctta cttgagaatc tgaacacctc ttctttccac tgaggaattc
1681 agggaagtgt tttcaccatg gattgctttg tacagtcaag gcagttctcc attttattag
1741 aaaatacaag ttgctaagca cttaggacca tttgagcttg tgggtcaccc actctggaag
1801 aaatagtcat gcttctttat tatttttttt aatcctttat ggacattgtt tttcttcttc
1861 cctgaaggaa atttggacca ttcagatttt atgttggttt tttgctgtga agtgctgcgc
1921 tctagtaact gccttagcaa ctgtagatgt ctcggataaa agtcctggat tttccattgg
1981 ttttcataat ggatgtttat atgaaactac taaagacttt ttaaatggct tgatgtagca
2041 gtcatagcaa gtttgtaaat agcatctatg ttacactctc ctagagtata aaatgtgaat
2101 gtttttgtag ctaaattgta attgaaactg gctcattcca gtttattgat ttcacaatag
2161 gggttaaatt ggcaaacatt catattttta cttcattttt aaaacaactg actgatagtt
2221 ctatattttc aaaatatttg aaaataaaaa gtattcccaa gtgattttaa tttaaaaaca
2281 aattggcttt gtctcattga tcagacaaaa agaaactagt attaagggaa gcgcaaacac
2341 atttattttg tactgcagaa aaattgcttt tttgtatcac tttttgtgta atggttagta
2401 aatgtcattt aagtcctttt atgtataaaa ctgccaaatg cttacctggt attttattag
2461 atgcagaaac agattggaaa cagctaaatt acaactttta catatggctc tgtcttattg
2521 tttcttcata ctgtgtctgt atttaatctt tttttatgga acctgttgcg cctatttatg
2581 aaataataaa tataggtgtt tgtaagtaaa tttgttagta tttgaaagag gtttctttga
2641 tgttttaact tttgctggca aaaaaaaatt cacgcttggt gtgaatactt tattatttag
2701 tttttacagt aacatgaata aagccaaacc tgcttttcat ttagcagcaa attaaagtaa
2761 ccagtcctta tttctgcatt tctttggttg atgcaaacaa aaaactatta tatttaagaa
2821 ctttatttct tcatacgaca taacagaatt gccctccaag tcacacaagc tccaagacta
2881 aacaaacaga caggtcctct gtcttaaaaa ggttacttct tggttctcag ctggttctag
2941 tcaattctga accaccaccc cccgaccccc gcaaaaaaaa aaaaaaa
//