LOCUS BC016657 2944 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens procollagen-lysine 1, 2-oxoglutarate 5-dioxygenase 1,
mRNA (cDNA clone MGC:8999 IMAGE:3917351), complete cds.
ACCESSION BC016657
VERSION BC016657.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2944)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2944)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC016657.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 26 Row: a Column: 2.
FEATURES Location/Qualifiers
source 1..2944
/db_xref="H-InvDB:HIT000037618"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:8999 IMAGE:3917351"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2944
/gene="PLOD1"
/gene_synonym="LH"
/db_xref="GeneID:5351"
/db_xref="HGNC:HGNC:9081"
/db_xref="MIM:153454"
CDS 18..2201
/gene="PLOD1"
/gene_synonym="LH"
/codon_start=1
/product="procollagen-lysine 1, 2-oxoglutarate
5-dioxygenase 1"
/protein_id="AAH16657.1"
/db_xref="GeneID:5351"
/db_xref="HGNC:HGNC:9081"
/db_xref="MIM:153454"
/translation="MRPLLLLALLGWLLLAEAKGDAKPEDNLLVLTVATKETEGFRRF
KRSAQFFNYKIQALGLGEDWNVEKGTSAGGGQKVRLLKKALEKHADKEDLVILFTDSY
DVLFASGPRELLKKFRQSRSQVVFSAEELIYPDRRLETKYPVVSDGKRFLGSGGFIGY
APNLSKLVAEWEGQDSDSDQLFYTKIFLDPEKREQINITLDHRCRIFQNLDGALDEVV
LKFEMGHVRARNLAYDTLPVLIHGNGPTKLQLNYLGNYIPRFWTFETGCTVCDEGLRS
LKGIGDEALPTVLVGVFIEQPTPFVSLFFQRLLRLHYPQKHMRLFIHNHEQHHKAQVE
EFLAQHGSEYQSVKLVGPEVRMANADARNMGADLCRQDRSCTYYFSVDADVALTEPNS
LRLLIQQNKNVIAPLMTRHGRLWSNFWGALSADGYYARSEDYVDIVQGRRVGVWNVPY
ISNIYLIKGSALRGELQSSDLFHHSKLDPDMAFCANIRQQDVFMFLTNRHTLGHLLSL
DSYRTTHLHNDLWEVFSNPEDWKEKYIHQNYTKALAGKLVETPCPDVYWFPIFTEVAC
DELVEEMEHFGQWSLGNNKDNRIQGGYENVPTIDIHMNQIGFEREWHKFLLEYIAPMT
EKLYPGYYTRAQFDLAFVVRYKPDEQPSLMPHHDASTFTINIALNRVGVDYEGGGCRF
LRYNCSIRAPRKGWTLMHPGRLTHYHEGLPTTRGTRYIAVSFVDP"
BASE COUNT 642 a 875 c 843 g 584 t
ORIGIN
1 cggacgcgtg ggcggccatg cggcccctgc tgctactggc cctgctgggc tggctgctgc
61 tggccgaagc gaagggcgac gccaagccgg aggacaacct tttagtcctc acggtggcca
121 ctaaggagac cgagggattc cgtcgcttca agcgctcagc tcagttcttc aactacaaga
181 tccaggcgct tggcctaggg gaggactgga atgtggagaa ggggacgtcg gcaggtggag
241 ggcagaaggt ccggctgctg aagaaagctc tggagaagca cgcagacaag gaggatctgg
301 tcattctctt cacagacagc tatgacgtgc tgtttgcatc ggggccccgg gagctcctga
361 agaagttccg gcagtccagg agccaggtgg tcttctctgc tgaggagctc atctacccag
421 accgcaggct ggagaccaag tatccggtgg tgtccgatgg caagaggttc ctgggctctg
481 gaggcttcat cggttatgcc cccaacctca gcaaactggt ggccgagtgg gagggccagg
541 acagcgacag cgatcagctg ttttacacca agatcttctt ggacccggag aagagggagc
601 agatcaatat caccctggac caccgctgcc gtatcttcca gaacctggat ggagccttgg
661 atgaggtcgt gctcaagttt gaaatgggcc atgtgagagc gaggaacctg gcctatgaca
721 ccctcccggt cctgatccat ggcaacgggc caaccaagct gcagttgaac tacctgggca
781 actacatccc gcgcttctgg accttcgaaa caggctgcac cgtgtgtgac gaaggcttgc
841 gcagcctcaa gggcattggg gatgaagctc tgcccacggt cctggtcggc gtgttcatcg
901 aacagcccac gccgtttgtg tccctgttct tccagcggct cctgcggctc cactaccccc
961 agaaacacat gcgacttttc atccacaacc acgagcagca ccacaaggct caggtggaag
1021 agttcctggc acagcatggc agcgagtacc agtctgtgaa gctggtgggc cctgaggtgc
1081 ggatggcgaa tgcagatgcc aggaacatgg gcgcagacct gtgccggcag gaccgcagct
1141 gcacctacta cttcagcgtg gatgctgacg tggccctgac cgagcccaac agcctgcggc
1201 tgctgatcca acagaacaag aacgtcattg ccccgctgat gacccggcat gggaggctgt
1261 ggtcgaactt ctggggggct ctcagtgcag atggctacta tgcccgttcc gaggactacg
1321 tggacattgt gcaggggcgg cgtgttggtg tctggaatgt gccctatatt tcaaacatct
1381 acttgatcaa gggcagtgcc ctgcggggtg agctgcagtc ctcagatctc ttccaccaca
1441 gcaagctgga ccccgacatg gccttctgtg ccaacatccg gcagcaggat gtgttcatgt
1501 tcctgaccaa ccggcacacc cttggccatc tgctctccct agacagctac cgcaccaccc
1561 acctgcacaa cgacctctgg gaggtgttca gcaaccccga ggactggaag gagaagtaca
1621 tccaccagaa ctacaccaaa gccctggccg ggaagctggt ggagacgccc tgcccggatg
1681 tctattggtt ccccatcttc acggaggtgg cctgtgatga gctggtggag gagatggagc
1741 actttggcca gtggtctctg ggcaacaaca aggacaaccg catccagggt ggctacgaga
1801 acgtgccgac tattgacatc cacatgaacc agatcggctt tgagcgggag tggcacaaat
1861 tcctgctgga gtacattgcg cccatgacgg agaagctcta ccccggctac tacaccaggg
1921 cccagtttga cctggccttt gtcgtccgct acaagcctga tgagcagccc tcactgatgc
1981 cacaccatga tgcctccacc ttcaccatca acatcgccct gaaccgagtc ggggtggatt
2041 acgagggcgg gggctgtcgg ttcctgcgct acaactgttc catccgagcc ccaaggaagg
2101 gctggaccct catgcaccct ggacgactca cgcattacca tgaggggctc cccaccacca
2161 ggggcacccg ctacatcgca gtctccttcg tcgatcccta attggccagg cctgaccctc
2221 ttggaccttt cttctttgcc gacaaccact gcccagcagc ctctgggacc tcggggtccc
2281 agggaaccca gtccagcctc ctggctgttg acttcccatt gctcttggag ccaccaatca
2341 aagagattca aagagattcc tgcaggccag aggcggaaca cacctttatg gctggggctc
2401 tccgtggtgt tctggaccca gcccctggag acaccattca cttttactgc tttgtagtga
2461 ctcgtgctct ccaacctgtc ttcctgaaaa accaaggccc ccttccccca cctcttccat
2521 ggggtgagac ttgagcagaa caggggcttc cccaagttgc ccagaaagac tgtctgggtg
2581 agaagccatg gccagagctt ctcccaggca caggtgttgc accagggact tctgcttcaa
2641 gttttggggt aaagacacct ggatcagact ccaagggctg ccctgagtct gggacttctg
2701 cctccatggc tggtcatgag agcaaaccgt agtcccctgg agacagcgac tccagagaac
2761 ctcttgggag acagaagagg catctgtgca cagctcgatc ttctacttgc ctgtggggag
2821 gggagtgaca ggtccacaca ccacactggg tcaccctgtc ctggatgcct ctgaagagag
2881 ggacagaccg tcagaaactg gagagtttct attaaaggtc atttaaacca aaaaaaaaaa
2941 aaaa
//