LOCUS BC016552 2514 bp mRNA linear HUM 09-JUN-2008
DEFINITION Homo sapiens HHIP-like 2, mRNA (cDNA clone MGC:22143
IMAGE:4452939), complete cds.
ACCESSION BC016552
VERSION BC016552.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2514)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2514)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 28 Row: a Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21362001.
FEATURES Location/Qualifiers
source 1..2514
/db_xref="H-InvDB:HIT000037592"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:22143 IMAGE:4452939"
/tissue_type="Kidney, hypernephroma"
/clone_lib="NIH_MGC_89"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2514
/gene="HHIPL2"
/gene_synonym="RP11-378J18.1"
/db_xref="GeneID:79802"
/db_xref="HGNC:HGNC:25842"
CDS 644..2233
/gene="HHIPL2"
/gene_synonym="RP11-378J18.1"
/codon_start=1
/product="HHIP-like 2"
/protein_id="AAH16552.1"
/db_xref="GeneID:79802"
/db_xref="HGNC:HGNC:25842"
/translation="MVAQDPQGCLQLCLSEVANGLRNPVSMVHAGDGTHRFFVAEQVG
VVWVYLPDGSRLEQPFLDLKNIVLTTPWIGDERGFLGLAFHPKFRHNRKFYIYYSCLD
KKKVEKIRISEMKVSRADPNKADLKSERVILEIEEPASNHNGGQLLFGLDGYMYIFTG
DGGQAGDPFGLFGNAQNKSSLLGKVLRIDVNRAGSHGKRYRVPSDNPFVSEPGAHPAI
YAYGIRNMWRCAVDRGDPITRQGRGRIFCGDVGQNRFEEVDLILKGGNYGWRAKEGFA
CYDKKLCHNASLDDVLPIYAYGHAVGKSVTGGYVYRGCESPNLNGLYIFGDFMSGRLM
ALQEDRKNKKWKKQDLCLGSTTSCAFPGLISTHSKFIISFAEDEAGELYFLATSYPSA
YAPRGSIYKFVDPSRRAPPGKCKYKPVPVRTKSKRIPFRPLAKTVLDLLKEQSEKAAR
KSSSATLASGPAQGLSEKGSSKKLASPTSSKNTLRGPGTKKKARVGPHVRQGKRRKSL
KSHSGRMRPSAEQKRAGRSLP"
BASE COUNT 610 a 656 c 679 g 569 t
ORIGIN
1 gcagagcagg gaagccaacc tgagcaaaca cagcagcccg agtgttccca aggccaaaat
61 gctgagaacg tccactccta atctgtgtgg tggtctgcat tgccgggccc cctggctctc
121 ttctggcatt ctctgcctct gcctcatatt cttgttaggc caggtgggct tgctgcaggg
181 acacccccag tgcctggatt acgggccccc tttccagccc cctctgcacc ttgagttttg
241 ctctgactat gagtccttcg gctgctgtga tcagcacaag gaccgccgca tcgctgcccg
301 gtactgggac atcatggaat attttgatct gaagagacat gagctgtgtg gagattacat
361 taaagacatc ctttgccagg agtgctcgcc ctacgcagcc cacctctacg acgccgaaaa
421 cacccagacg cctctccgga atctcccggg cctctgctct gattactgct ctgccttcca
481 ttctaactgt cactcagcca tttccctgct gaccaatgac cgcggcctcc aggagtctca
541 tggaagggac ggtacccgct tctgccacct cctggacctt cctgacaagg actattgctt
601 ccctaatgtc ctgaggaacg actatctcaa ccgccacctg ggcatggtgg cccaagatcc
661 tcagggctgc ctgcagctct gcctgagcga ggtggccaac gggctgagga accccgtctc
721 catggtccat gctggggacg gcacccatcg cttctttgtt gccgagcagg taggagtggt
781 gtgggtctac ctccctgatg ggagtcgcct ggagcaaccc ttcctggacc tcaagaacat
841 cgtgttgacc accccatgga tcggggatga gagaggcttc ttggggttgg cttttcaccc
901 caaattccgc cacaatcgca agttctatat ttattattcg tgcctggaca agaagaaggt
961 agaaaagatc cgaattagtg agatgaaggt ttctcgggct gatcctaaca aagctgacct
1021 gaaatcagag agggtcatct tggagattga agaaccagcc tcaaaccata atggcggaca
1081 acttcttttt ggcctggatg gctatatgta catattcact ggggacgggg gacaggctgg
1141 agatcccttt ggcctgtttg gaaatgctca gaacaaaagt tccctgctgg gaaaagtttt
1201 aaggatcgat gtgaacaggg caggctcaca tggcaagcgg taccgagtcc cctcggacaa
1261 tccatttgtt tctgagccag gggcccaccc cgccatctat gcctatggga tcaggaacat
1321 gtggcgttgt gctgtggacc gaggggaccc catcacgcgc cagggccgag gccggatatt
1381 ctgtggggac gtgggccaga acaggtttga agaggttgac ctcattttga aaggtggaaa
1441 ctatggctgg agagcaaagg aagggtttgc atgttatgac aaaaaacttt gtcacaatgc
1501 ctctttggat gatgttctgc caatctatgc ttatggccat gcagtgggga agtcagtcac
1561 tggaggttat gtctatcgtg gttgtgaatc cccaaatctc aatggcctgt atatctttgg
1621 agacttcatg agtggtcgac ttatggcttt gcaggaagat agaaaaaaca agaaatggaa
1681 gaagcaggat ctttgcctgg gcagcaccac gtcctgtgcc ttcccagggc tgatcagcac
1741 ccatagcaag ttcatcatct cctttgctga agatgaagca ggggagctgt atttcctggc
1801 gacctcttac ccaagtgcct atgcaccacg tggatctatt tacaagtttg ttgacccctc
1861 aaggcgagca cccccaggca agtgcaaata caagccagtg cccgtgagaa ccaagagtaa
1921 gcggatcccg ttcagaccac tcgccaagac agtcttggac ttgctaaagg aacaatcaga
1981 gaaagctgct agaaaatctt ccagtgcaac cttagcttct ggcccagccc agggtttgtc
2041 tgagaaaggc tcctccaaga agctggcttc tcctacaagc agcaagaata cattgcgagg
2101 gcctggtaca aagaagaaag ccagagtggg gccccacgtc cgccagggca agaggaggaa
2161 gagcctgaaa agccacagtg gcaggatgag gccatcagca gagcagaagc gagctggcag
2221 aagtctccct tgacctattg gtcaaggtgg ccgacagggt gacgtgagag aggagagcca
2281 cctcatcaaa tgaaagtcac tgctgaataa agaccttaga agtctgggaa gccagggtag
2341 aggtggggca gggcggtttt cctctccctg ggaaatcttg ctgtctactg aataaataaa
2401 tgcaccttct ctgtatgcag tgcttctgtg ggagaccata tcccagattg ctggtgcacc
2461 tgggttatgg taagcactag tccatgagcc tgcttggaat cacaaaaaaa aaaa
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