LOCUS BC016482 3011 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1, mRNA (cDNA clone MGC:21866 IMAGE:4341673), complete cds. ACCESSION BC016482 VERSION BC016482.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3011) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3011) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (31-OCT-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Lou Staudt cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 26 Row: j Column: 10. FEATURES Location/Qualifiers source 1..3011 /db_xref="H-InvDB:HIT000037586" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:21866 IMAGE:4341673" /tissue_type="Lymph, lymphoma" /clone_lib="NIH_MGC_85" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..3011 /gene="SMARCAL1" /gene_synonym="HARP" /gene_synonym="HHARP" /db_xref="GeneID:50485" /db_xref="HGNC:HGNC:11102" /db_xref="MIM:606622" CDS 92..2956 /gene="SMARCAL1" /gene_synonym="HARP" /gene_synonym="HHARP" /codon_start=1 /product="SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1" /protein_id="AAH16482.1" /db_xref="GeneID:50485" /db_xref="HGNC:HGNC:11102" /db_xref="MIM:606622" /translation="MSLPLTEEQRKKIEENRQKALGRRAEKLLAEQHQRTSSGTSIAG NPFQAKQGPSQNFPRESCKPVSHGVIFKQQNLSSSSNADQRPHDSHSFQAKGIWKKPE EMPTACPGHSPRSQMALTGISPPLAQSPPEVPKQQLLSYELGQGHAQASPEIRFTPFA NPTHKPLAKPKSSQETPAHSSGQPPRDAKLEAKTAKASPSGQNISYIHSSSESVTPRT EGRLQQKSGSSVQKGVNSQKGKCVRNGDRFQVLIGYNAELIAVFKTLPSKNYDPDTKT WNFSMNDYSALMKAAQSLPTVNLQPLEWAYGSSESPSTSSEGQAGLPSAPSLSFVKGR CMLISRAYFEADISYSQDLIALFKQMDSRRYDVKTRKWSFLLQEHSKLIAKVRCLPQV QLDPLPTTLTLAFASQLKKTSLSLTPDVPEADLSEVDPKLVSNLMPFQRAGVNFAIAK GGRLLLADDMGLGKTIQAICIAAFYRKEWPLLVVVPSSVRFTWEQAFLRWLPSLSPDC INVVVTGKDRLTAGLINIVSFDLLSKLEKQLKTPFKVVIIDESHFLKNSRTARCRAAM PVLKVAKRVILLSGTPAMSRPAELYTQIIAVKPTFFPQFHAFGLRYCDAKRMPWGWDY SGSSNLGELKLLLEEAVMLRRLKSDVLSQLPAKQRKIVVIAPGRINARTRAALDAAAK EMTTKDKTKQQQKDALILFFNRTAEAKIPSVIEYILDLLESGREKFLVFAHHKVVLDA ITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTFSSADL VVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKVLAEA GLSETNFSEMTESTDYLYKDPKQQKIYDLFQKSFEKEGSDMELLEAAESFDPGSASGT SGSSSQNMGDTLDESSLTASPQKKRRFEFFDNWDSFTSPL" BASE COUNT 819 a 806 c 733 g 653 t ORIGIN 1 gaaaaagact atgttagcaa gtgtcacgcc atgcttttgc caactttcca attaaaggtt 61 gacattcctg cataagcatt tctctgtgaa aatgtccttg cctcttacag aggagcagag 121 gaaaaagatt gaagagaatc gacaaaaggc tctgggccgc agagctgaga agttattggc 181 agaacagcat cagaggacta gctcgggcac ctccattgct ggcaacccat tccaggccaa 241 gcaaggccca tcccaaaatt tcccaaggga gtcttgtaag ccagtgagcc atggtgtcat 301 tttcaagcaa cagaatctca gtagctcatc taatgctgac caaagacctc atgattccca 361 cagttttcag gcaaagggaa tatggaaaaa gccagaagaa atgcccacag cctgcccagg 421 ccacagtcca cgtagtcaaa tggctctcac tggaatctct cctcccttgg cacaaagtcc 481 tccagaggtc cctaaacaac agctcttgag ttatgagtta ggtcaaggtc atgctcaggc 541 ttcacctgag atcaggttca caccctttgc taacccaact cataagcctc tggccaaacc 601 aaagagttcc caagagacac cagctcattc ctctggacag cctcccaggg atgctaagtt 661 agaggccaag acagcaaaag cctccccttc ggggcagaac atttcttaca tccattctag 721 ctcagagagt gtaacgccca ggacagaagg aagactccag cagaagtcag ggtcctcagt 781 ccaaaaagga gtgaactctc agaagggaaa gtgcgtaagg aacggcgatc gtttccaggt 841 gttgattggg tacaatgcgg aactcattgc agtgtttaag accctgccca gcaagaatta 901 tgatcctgac accaagacgt ggaacttcag catgaatgac tatagtgccc tgatgaaagc 961 agcccagagc ctccccacgg tcaacctgca gcctctggaa tgggcctatg gcagcagcga 1021 gtcaccctcc accagcagtg agggacaggc cggccttcca tcagctccat ccctttcatt 1081 tgtcaaaggg cgatgcatgc tcatctccag ggcctacttc gaggcagaca tcagttattc 1141 acaggacctt attgcgcttt ttaaacagat ggattccaga agatatgatg tcaagaccag 1201 gaagtggagc tttctcttgc aagagcacag taaactaatt gcaaaggtgc gctgcctccc 1261 acaagttcag ctggaccctc tgcccacgac tctcaccctg gcgtttgctt ctcagctcaa 1321 gaagacatct ctcagtctca cgccagatgt cccagaggca gacctttctg aagtggaccc 1381 caagctcgtg tctaatctga tgccctttca gagagctgga gtcaattttg ccatagccaa 1441 aggaggccgc ctgctgctcg ctgacgacat gggcctgggg aagaccatcc aagccatctg 1501 catcgcagcc ttttaccgga aggagtggcc gctcctggtg gtggtgccat cctccgtgcg 1561 cttcacctgg gagcaggcct tccttcggtg gctgccatct ctgagcccag attgcatcaa 1621 cgtcgtggtg actgggaagg accgcctgac agctggcctg atcaacattg tcagctttga 1681 ccttcttagc aagttggaaa aacagctaaa aacccctttt aaagttgtca tcattgatga 1741 atctcacttc ctcaaaaaca gtaggactgc ccgctgtcga gcagctatgc cggtcctaaa 1801 ggttgccaag agggtgatcc tgttgtcggg cacaccagcc atgtcccggc ccgcagagct 1861 ctacacgcag atcatcgcag tcaagccaac tttcttcccc cagtttcatg cctttggact 1921 tcgctactgt gatgccaaac ggatgccttg ggggtgggac tactcaggtt cctccaacct 1981 gggagagctg aagctcctgc tggaggaagc agtcatgctg cggcgcctca agtccgacgt 2041 cctttcccag ctgcctgcca agcagcgcaa gatagtggtg attgccccag gacggatcaa 2101 tgccaggacc agagctgccc tggatgctgc agccaaggaa atgaccacca aggacaaaac 2161 taaacagcag cagaaagatg ccctcattct cttcttcaac agaacagctg aagctaaaat 2221 cccatctgtc attgaatata tcttggacct actggaaagt ggaagagaga agtttttagt 2281 atttgcacac cataaggtgg tcctggacgc aattacgcaa gagcttgaga gaaagcacgt 2341 gcagcacatc cgcatcgatg gctccacctc atcagctgag cgggaggacc tgtgccagca 2401 gttccaactg tcggagaggc atgctgtggc cgtgctgtcc atcaccgctg ccaatatggg 2461 cctcaccttc tcctcggctg acctggtggt gtttgctgag ctgttttgga acccaggggt 2521 gctgatccag gctgaggacc gcgtgcaccg cattggacag accagctccg tgggcattca 2581 ctacctcgtg gcaaagggca cagctgatga ctacctttgg cccctgattc aagagaagat 2641 taaagttctg gcagaagccg ggctttctga gaccaatttt tcagaaatga cagaatccac 2701 tgattacctc tacaaggacc caaagcagca gaagatctac gacctattcc agaagtcctt 2761 tgagaaagaa ggaagtgata tggagctcct ggaagcagca gagtcctttg acccaggaag 2821 tgcttcagga acatctggaa gtagttccca gaacatggga gacaccctgg atgaaagctc 2881 attgacagcc agtccacaga agaaaaggag atttgaattt tttgataact gggacagctt 2941 tacgtctccc ctgtaaaagg ggcaaaaaga aaaaaataaa aagcatttta aaatcaaaaa 3001 aaaaaaaaaa a //