LOCUS       BC016482                3011 bp    mRNA    linear   HUM 15-JUL-2006
DEFINITION  Homo sapiens SWI/SNF related, matrix associated, actin dependent
            regulator of chromatin, subfamily a-like 1, mRNA (cDNA clone
            MGC:21866 IMAGE:4341673), complete cds.
ACCESSION   BC016482
VERSION     BC016482.1
KEYWORDS    MGC.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 3011)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 3011)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (31-OCT-2001) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: Lou Staudt
            cDNA Library Preparation: Life Technologies, Inc.
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Baylor College of Medicine Human Genome
            Sequencing Center
            Center code: BCM-HGSC
            Web site: http://www.hgsc.bcm.tmc.edu/cdna/
            Contact: amg@bcm.tmc.edu
            Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
            Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
            A.N., Gibbs, R.A.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAK Plate: 26 Row: j Column: 10.
FEATURES             Location/Qualifiers
     source          1..3011
                     /db_xref="H-InvDB:HIT000037586"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="MGC:21866 IMAGE:4341673"
                     /tissue_type="Lymph, lymphoma"
                     /clone_lib="NIH_MGC_85"
                     /lab_host="DH10B"
                     /note="Vector: pCMV-SPORT6"
     gene            1..3011
                     /gene="SMARCAL1"
                     /gene_synonym="HARP"
                     /gene_synonym="HHARP"
                     /db_xref="GeneID:50485"
                     /db_xref="HGNC:HGNC:11102"
                     /db_xref="MIM:606622"
     CDS             92..2956
                     /gene="SMARCAL1"
                     /gene_synonym="HARP"
                     /gene_synonym="HHARP"
                     /codon_start=1
                     /product="SWI/SNF related, matrix associated, actin
                     dependent regulator of chromatin, subfamily a-like 1"
                     /protein_id="AAH16482.1"
                     /db_xref="GeneID:50485"
                     /db_xref="HGNC:HGNC:11102"
                     /db_xref="MIM:606622"
                     /translation="MSLPLTEEQRKKIEENRQKALGRRAEKLLAEQHQRTSSGTSIAG
                     NPFQAKQGPSQNFPRESCKPVSHGVIFKQQNLSSSSNADQRPHDSHSFQAKGIWKKPE
                     EMPTACPGHSPRSQMALTGISPPLAQSPPEVPKQQLLSYELGQGHAQASPEIRFTPFA
                     NPTHKPLAKPKSSQETPAHSSGQPPRDAKLEAKTAKASPSGQNISYIHSSSESVTPRT
                     EGRLQQKSGSSVQKGVNSQKGKCVRNGDRFQVLIGYNAELIAVFKTLPSKNYDPDTKT
                     WNFSMNDYSALMKAAQSLPTVNLQPLEWAYGSSESPSTSSEGQAGLPSAPSLSFVKGR
                     CMLISRAYFEADISYSQDLIALFKQMDSRRYDVKTRKWSFLLQEHSKLIAKVRCLPQV
                     QLDPLPTTLTLAFASQLKKTSLSLTPDVPEADLSEVDPKLVSNLMPFQRAGVNFAIAK
                     GGRLLLADDMGLGKTIQAICIAAFYRKEWPLLVVVPSSVRFTWEQAFLRWLPSLSPDC
                     INVVVTGKDRLTAGLINIVSFDLLSKLEKQLKTPFKVVIIDESHFLKNSRTARCRAAM
                     PVLKVAKRVILLSGTPAMSRPAELYTQIIAVKPTFFPQFHAFGLRYCDAKRMPWGWDY
                     SGSSNLGELKLLLEEAVMLRRLKSDVLSQLPAKQRKIVVIAPGRINARTRAALDAAAK
                     EMTTKDKTKQQQKDALILFFNRTAEAKIPSVIEYILDLLESGREKFLVFAHHKVVLDA
                     ITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTFSSADL
                     VVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKVLAEA
                     GLSETNFSEMTESTDYLYKDPKQQKIYDLFQKSFEKEGSDMELLEAAESFDPGSASGT
                     SGSSSQNMGDTLDESSLTASPQKKRRFEFFDNWDSFTSPL"
BASE COUNT          819 a          806 c          733 g          653 t
ORIGIN      
        1 gaaaaagact atgttagcaa gtgtcacgcc atgcttttgc caactttcca attaaaggtt
       61 gacattcctg cataagcatt tctctgtgaa aatgtccttg cctcttacag aggagcagag
      121 gaaaaagatt gaagagaatc gacaaaaggc tctgggccgc agagctgaga agttattggc
      181 agaacagcat cagaggacta gctcgggcac ctccattgct ggcaacccat tccaggccaa
      241 gcaaggccca tcccaaaatt tcccaaggga gtcttgtaag ccagtgagcc atggtgtcat
      301 tttcaagcaa cagaatctca gtagctcatc taatgctgac caaagacctc atgattccca
      361 cagttttcag gcaaagggaa tatggaaaaa gccagaagaa atgcccacag cctgcccagg
      421 ccacagtcca cgtagtcaaa tggctctcac tggaatctct cctcccttgg cacaaagtcc
      481 tccagaggtc cctaaacaac agctcttgag ttatgagtta ggtcaaggtc atgctcaggc
      541 ttcacctgag atcaggttca caccctttgc taacccaact cataagcctc tggccaaacc
      601 aaagagttcc caagagacac cagctcattc ctctggacag cctcccaggg atgctaagtt
      661 agaggccaag acagcaaaag cctccccttc ggggcagaac atttcttaca tccattctag
      721 ctcagagagt gtaacgccca ggacagaagg aagactccag cagaagtcag ggtcctcagt
      781 ccaaaaagga gtgaactctc agaagggaaa gtgcgtaagg aacggcgatc gtttccaggt
      841 gttgattggg tacaatgcgg aactcattgc agtgtttaag accctgccca gcaagaatta
      901 tgatcctgac accaagacgt ggaacttcag catgaatgac tatagtgccc tgatgaaagc
      961 agcccagagc ctccccacgg tcaacctgca gcctctggaa tgggcctatg gcagcagcga
     1021 gtcaccctcc accagcagtg agggacaggc cggccttcca tcagctccat ccctttcatt
     1081 tgtcaaaggg cgatgcatgc tcatctccag ggcctacttc gaggcagaca tcagttattc
     1141 acaggacctt attgcgcttt ttaaacagat ggattccaga agatatgatg tcaagaccag
     1201 gaagtggagc tttctcttgc aagagcacag taaactaatt gcaaaggtgc gctgcctccc
     1261 acaagttcag ctggaccctc tgcccacgac tctcaccctg gcgtttgctt ctcagctcaa
     1321 gaagacatct ctcagtctca cgccagatgt cccagaggca gacctttctg aagtggaccc
     1381 caagctcgtg tctaatctga tgccctttca gagagctgga gtcaattttg ccatagccaa
     1441 aggaggccgc ctgctgctcg ctgacgacat gggcctgggg aagaccatcc aagccatctg
     1501 catcgcagcc ttttaccgga aggagtggcc gctcctggtg gtggtgccat cctccgtgcg
     1561 cttcacctgg gagcaggcct tccttcggtg gctgccatct ctgagcccag attgcatcaa
     1621 cgtcgtggtg actgggaagg accgcctgac agctggcctg atcaacattg tcagctttga
     1681 ccttcttagc aagttggaaa aacagctaaa aacccctttt aaagttgtca tcattgatga
     1741 atctcacttc ctcaaaaaca gtaggactgc ccgctgtcga gcagctatgc cggtcctaaa
     1801 ggttgccaag agggtgatcc tgttgtcggg cacaccagcc atgtcccggc ccgcagagct
     1861 ctacacgcag atcatcgcag tcaagccaac tttcttcccc cagtttcatg cctttggact
     1921 tcgctactgt gatgccaaac ggatgccttg ggggtgggac tactcaggtt cctccaacct
     1981 gggagagctg aagctcctgc tggaggaagc agtcatgctg cggcgcctca agtccgacgt
     2041 cctttcccag ctgcctgcca agcagcgcaa gatagtggtg attgccccag gacggatcaa
     2101 tgccaggacc agagctgccc tggatgctgc agccaaggaa atgaccacca aggacaaaac
     2161 taaacagcag cagaaagatg ccctcattct cttcttcaac agaacagctg aagctaaaat
     2221 cccatctgtc attgaatata tcttggacct actggaaagt ggaagagaga agtttttagt
     2281 atttgcacac cataaggtgg tcctggacgc aattacgcaa gagcttgaga gaaagcacgt
     2341 gcagcacatc cgcatcgatg gctccacctc atcagctgag cgggaggacc tgtgccagca
     2401 gttccaactg tcggagaggc atgctgtggc cgtgctgtcc atcaccgctg ccaatatggg
     2461 cctcaccttc tcctcggctg acctggtggt gtttgctgag ctgttttgga acccaggggt
     2521 gctgatccag gctgaggacc gcgtgcaccg cattggacag accagctccg tgggcattca
     2581 ctacctcgtg gcaaagggca cagctgatga ctacctttgg cccctgattc aagagaagat
     2641 taaagttctg gcagaagccg ggctttctga gaccaatttt tcagaaatga cagaatccac
     2701 tgattacctc tacaaggacc caaagcagca gaagatctac gacctattcc agaagtcctt
     2761 tgagaaagaa ggaagtgata tggagctcct ggaagcagca gagtcctttg acccaggaag
     2821 tgcttcagga acatctggaa gtagttccca gaacatggga gacaccctgg atgaaagctc
     2881 attgacagcc agtccacaga agaaaaggag atttgaattt tttgataact gggacagctt
     2941 tacgtctccc ctgtaaaagg ggcaaaaaga aaaaaataaa aagcatttta aaatcaaaaa
     3001 aaaaaaaaaa a
//