LOCUS BC016474 2831 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens CCR4-NOT transcription complex, subunit 3, mRNA (cDNA clone MGC:17152 IMAGE:4181383), complete cds. ACCESSION BC016474 VERSION BC016474.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2831) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2831) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (31-OCT-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: David N. Louis, M.D. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 12 Row: k Column: 11 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 42544236. FEATURES Location/Qualifiers source 1..2831 /db_xref="H-InvDB:HIT000037580" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:17152 IMAGE:4181383" /tissue_type="Brain, anaplastic oligodendroglioma with 1p/19q loss" /clone_lib="NCI_CGAP_Brn67" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2831 /gene="CNOT3" /gene_synonym="KIAA0691" /gene_synonym="LENG2" /gene_synonym="NOT3H" /db_xref="GeneID:4849" /db_xref="HGNC:HGNC:7879" /db_xref="MIM:604910" CDS 278..2539 /gene="CNOT3" /gene_synonym="KIAA0691" /gene_synonym="LENG2" /gene_synonym="NOT3H" /codon_start=1 /product="CCR4-NOT transcription complex, subunit 3" /protein_id="AAH16474.1" /db_xref="GeneID:4849" /db_xref="HGNC:HGNC:7879" /db_xref="MIM:604910" /translation="MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKY EADLKKEIKKLQRLRDQIKTWVASNEIKDKRQLIDNRKLIETQMERFKVVERETKTKA YSKEGLGLAQKVDPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDK DKQDRIEGLKRHIEKHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPD FEENEFLYDDLDLEDIPQALVATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPAN CTTENSEDDKKRGRSTDSEVSQSPAKNGSKPVHSNQHPQSPAVPPTYPSGPPPAASAL STTPGNNGVPAPAAPPSALGPKASPAPSHNSGTPAPYAQAVAPPAPSGPSTTQPRPPS VQPSGGGGGGSGGGGSSSSSNSSAGGGAGKQNGATSYSSVVADSPAEVALSSSGGNNA SSQALGPPSGPHNPPPSTSKEPSAAAPTGAGGVAPGSGNNSGGPSLLVPLPVNPPSSP TPSFSDAKAAGALLNGPPQFSTAPEIKAPEPLSSLKSMAERAAISSGIEDPVPTLHLT ERDIILSSTSAPPASAQPPLQLSEVNIPLSLGVCPLGPVPLTKEQLYQQAMEEAAWHH MPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLSTETLFFIFYYLEGTK AQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGF TFEYRYLEDRDLQ" BASE COUNT 665 a 953 c 776 g 437 t ORIGIN 1 ggaccgggcc cggtcagctt ccgcggagcc attggcagac gccgtggcct cccttgagcc 61 ccgacccccg tcgtcagaac aaccccgggc ccactccccc aaccccactt ccgcttcgcg 121 ccgctatcgc gatagcgccc gggcccgggg cgcgagaaaa aggcggcggg cgctcgcctc 181 ccccgcctgt cgcgatacgc tcctcagcgg cggcgccagc tcctgtgcgt ccgtctccaa 241 gagagtatga agagagtgcg tctgtagggc agggaagatg gcggacaagc gcaaactcca 301 aggtgagatt gatcgctgcc tcaagaaggt gtccgagggc gtggagcagt ttgaagatat 361 ttggcagaag ctccacaatg cagccaacgc gaaccagaaa gaaaagtatg aggctgacct 421 aaagaaggag attaagaagc tacaacggct gagggaccaa atcaagacat gggtagcgtc 481 caacgagatc aaggacaaga ggcagcttat agacaaccgc aagctcattg agacgcaaat 541 ggaacggttc aaagttgtgg aacgagagac caaaaccaaa gcttacagca aagagggcct 601 gggcctggcc cagaaggtag atcctgccca gaaggagaag gaagaggttg gccagtggct 661 cacgaatacc atcgacacgc tcaacatgca ggtggaccag tttgagagtg aagtggagtc 721 actgtcagtg cagacacgca agaagaaggg cgacaaggat aagcaggacc ggattgaggg 781 cttgaagcgg cacatcgaga agcaccgcta ccacgtgcgc atgctagaga ccatcctgcg 841 catgctggac aatgactcca tcctcgttga cgccatccgc aagatcaagg acgacgttga 901 gtactatgtt gactcatccc aggaccccga cttcgaggag aacgagtttc tctacgatga 961 cctggacctc gaggacattc cacaggcgct ggtcgccacc tcccccccca gccacagcca 1021 catggaggat gagatcttca accagtccag cagcacgccc acctcaacca cctccagctc 1081 tcccatcccg cccagcccag ccaactgtac cacggaaaac tctgaagatg ataagaagag 1141 gggacgttcc acagacagtg aagtcagcca gtctccagcc aaaaacggct ccaagcctgt 1201 ccacagcaac cagcaccctc agtccccagc tgtgccgccc acctacccct ccggcccccc 1261 gcctgctgcc tctgccttga gcaccactcc tggcaacaat ggggtccccg cccccgcagc 1321 acccccaagt gccctgggcc ccaaggccag tccagctccc agccacaact cgggcacccc 1381 tgctccctat gcccaggcgg tggccccacc agctcccagt gggcccagca cgacccagcc 1441 ccggcccccc agcgtccagc ctagcggagg cggaggcggc ggcagcggag gcggagggag 1501 cagcagcagt agtaacagca gtgccggtgg aggggctggc aagcagaatg gcgccaccag 1561 ttacagctca gttgtggcag acagcccggc agaggtggct ttgagcagca gtgggggcaa 1621 caatgccagc agccaggcct tgggcccccc ttccggcccc cacaacccac ctcccagcac 1681 ctcgaaggaa cccagtgcgg cagccccaac gggggctggg ggcgtggccc caggctcagg 1741 gaacaactca gggggaccca gcctcctggt gccactgcct gtgaatcctc ccagctcccc 1801 aacgcccagc ttcagtgatg ccaaggcagc cggtgccctg ctcaatgggc ctccacagtt 1861 cagcaccgcc ccagaaatca aggcccctga gcctctgagc tccttgaagt ccatggcgga 1921 acgggcagcc atcagctctg gcattgagga ccctgtgcca acgctgcacc tgaccgagcg 1981 agacatcatc ctgagcagta catcagcacc tccggcctca gcccagccgc ccctgcagct 2041 gtcagaggtg aacataccgc tgtcgctggg tgtctgtcca ctgggccctg tgcccctcac 2101 caaggagcag ctctatcagc aggccatgga agaggccgcc tggcaccaca tgcctcaccc 2161 ctctgactct gagcgtattc ggcagtacct cccccggaac ccctgtccga cgccccccta 2221 ccaccaccag atgccacccc cacactcgga cactgtggaa ttctaccagc gcctgtcgac 2281 cgagacactc ttcttcatct tctactatct ggagggcact aaggcacagt atctggcagc 2341 caaggcccta aagaagcagt catggcgatt ccacaccaag tacatgatgt ggttccagag 2401 gcacgaggag cccaagacca tcactgacga gtttgagcag ggcacctaca tctactttga 2461 ctacgagaag tggggccagc ggaagaagga aggcttcacc tttgagtacc gctacctgga 2521 ggaccgggac ctccagtgac accggcccct ccctctaccc acccccttcc ccttgcatgc 2581 tgatccccct gcccaggtga gggccctgcc ctggaagact ggagggaggc cccaagccac 2641 ggggcatccc cctctcccag gaagcaggga gggggccggg aggttttcct ctcagcccca 2701 ccctgggggc ccgggggcga gggctgcccc ctcctcccct ccccagtgag ggacattttt 2761 tggtaaacct attttcattt tggaaaatat ttatgaataa atagttttat atgaaaaaaa 2821 aaaaaaaaaa a //