LOCUS BC016445 2376 bp mRNA linear HUM 30-DEC-2006
DEFINITION Homo sapiens vacuolar protein sorting 33 homolog B (yeast), mRNA
(cDNA clone MGC:17462 IMAGE:3449387), complete cds.
ACCESSION BC016445
VERSION BC016445.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2376)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2376)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 19 Row: a Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 18105057.
FEATURES Location/Qualifiers
source 1..2376
/db_xref="H-InvDB:HIT000037571"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17462 IMAGE:3449387"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_10"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2376
/gene="VPS33B"
/db_xref="GeneID:26276"
/db_xref="HGNC:HGNC:12712"
/db_xref="MIM:608552"
CDS 208..2061
/gene="VPS33B"
/codon_start=1
/product="vacuolar protein sorting 33 homolog B (yeast)"
/protein_id="AAH16445.1"
/db_xref="GeneID:26276"
/db_xref="HGNC:HGNC:12712"
/db_xref="MIM:608552"
/translation="MAFPHRPDAPELPDFSMLKRLARDQLIYLLEQLPGKKDLFIEAD
LMSPLDRIANVSILKQHEVDKLYKVENKPALSSNEQLCFLVRPRIKNMRYIASLVNAD
KLAGRTRKYKVIFSPQKFYACEMVLEEEGIYGDVSCDEWAFSLLPLDVDLLSMELPEF
FRDYFLEGDQRWINTVAQALHLLSTLYGPFPNCYGIGRCAKMAYELWRNLEEEEDGET
KGRRPEIGHIFLLDRDVDFVTALCSQVVYEGLVDDTFRIKCGSVDFGPEVTSSDKSLK
VLLNAEDKVFNEIRNEHFSNVFGFLSQKARNLQAQYDRRRGMDIKQMKNFVSQELKGL
KQEHRLLSLHIGACESIMKKKTKQDFQELIKTEHALLEGFNIRESTSYIEEHIDRQVS
PIESLRLMCLLSITENGLIPKDYRSLKTQYLQSYGPEHLLTFSNLRRAGLLTEQAPGD
TLTAVESKVSKLVTDKAAGKITDAFSSLAKRSNFRAISKKLNLIPRVDGEYDLKVPRD
MAYVFSGAYVPLSCRIIEQVLERRSWQGLDEVVRLLNCSDFAFTDMTKEDKASSESLR
LILVVFLGGCTFSEISALRFLGREKGYRFIFLTTAVTNSARLMEAMSEVKA"
BASE COUNT 590 a 585 c 641 g 560 t
ORIGIN
1 gacaaggctg ctccgaggta gtagctctct tgcctggagg tggccattca ttcctggagt
61 gctgctgagg agcgagggcc catctggggt ctctggaagt cggtgcccag gcctgaagga
121 tagcccccct tgcgcttccc tgggctgcgg ccggccttct cagaacgaag ggcgtccttc
181 caccccgcgg cgcaggtgat cgctgccatg gcttttcccc atcggccgga cgcccctgag
241 ctgcctgact tctccatgct gaagaggctg gctcgagacc agctcatcta tctgctggag
301 cagcttcctg gaaaaaagga tttattcatt gaggcagatc tcatgagccc tttggatcga
361 attgccaatg tctccatcct gaagcaacac gaagtagaca agctatacaa ggtggagaac
421 aagccagccc tcagctccaa tgaacaattg tgcttcttgg tcagaccccg catcaagaat
481 atgcgataca ttgccagtct tgtcaatgct gacaaattgg ctggccgaac tcgcaaatac
541 aaagtgatct tcagccctca aaagttctat gcgtgtgaga tggtgcttga ggaagaggga
601 atctatggag atgtgagctg tgatgaatgg gccttctctt tgctgcctct tgatgtggat
661 ctgctgagca tggaactacc agaatttttc agggattact ttctggaagg agatcagcgt
721 tggatcaaca ctgtagctca ggccttacac cttctcagca ctctctatgg accctttcca
781 aactgctatg gaattggcag gtgcgccaag atggcatatg aattgtggag gaacctggag
841 gaggaggagg atggcgaaac caagggccga aggccagaga ttggacatat ctttctcttg
901 gacagagatg tggactttgt gacagcactt tgctcccaag tggtttatga gggcctagta
961 gatgacacct tccgcatcaa gtgtgggagt gtcgactttg gcccagaagt cacatcctct
1021 gacaagagcc tgaaggtgct actcaatgcc gaggacaagg tgtttaatga gattcggaac
1081 gagcacttct ccaatgtctt tggcttcttg agccagaagg cccggaactt gcaggcccag
1141 tatgatcgcc ggagaggcat ggacattaag cagatgaaga atttcgtgtc ccaggagctc
1201 aagggcctga aacaggagca ccgcctgctg agtctccata ttggggcctg tgaatccatc
1261 atgaagaaga aaaccaagca ggatttccag gagctaatca agactgagca tgcactgcta
1321 gaggggttca acatccggga gagcaccagc tacattgagg aacacataga ccggcaggtg
1381 tcgcctatag aaagcctgcg cctcatgtgc cttttgtcca tcactgagaa tggtttgatc
1441 cccaaggatt accgatctct gaaaacacag tatctgcaga gctatggccc tgagcacctg
1501 ctaaccttct ccaatctgcg aagagctggg ctcctaacgg agcaggcccc cggggacacc
1561 ctcacagccg tggagagtaa agtgagcaag ctggtgaccg acaaggctgc aggaaagatt
1621 actgatgcct tcagttctct ggccaagagg agcaattttc gtgccatcag caaaaagctg
1681 aatttgatcc cacgtgtgga cggcgagtat gatctgaaag tgccccgaga catggcttac
1741 gtcttcagtg gtgcttatgt gcccctgagc tgccgaatca ttgagcaggt gctagagcgg
1801 cgaagctggc agggccttga tgaggtggta cggctgctca actgcagtga ctttgcattc
1861 acagatatga ctaaggaaga caaggcttcc agtgagtccc tgcgcctcat cttggtggtg
1921 ttcttgggtg gttgtacatt ctctgagatc tcagccctcc ggttcctggg cagagagaaa
1981 ggctacaggt tcattttcct gacgacagca gtcacaaaca gcgctcgcct tatggaggcc
2041 atgagtgagg tgaaagcctg atgtttttcc cggccagtgt tgacatcttc cctgaacaca
2101 ttcctcagtg agatgcaggc atctggcacc cagctgctat aaccaagtgt ccaccaacta
2161 cctgctaaga gccgggagca tggaacgtgt tgggatttag agaacattat ctgagaaaag
2221 agttcacttc ctgctcccag gatatttctc ttttctgttt atgaagtaca acccatgctg
2281 ctaagatgcg agcaggaaga ggcatccttt gctaaatcct gtttgaatgt cattgtaaat
2341 aaagcctctg ctctcagatg taaaaaaaaa aaaaaa
//