LOCUS BC016393 2077 bp mRNA linear HUM 20-AUG-2003
DEFINITION Homo sapiens SOX2 overlapping transcript (non-coding RNA), mRNA
(cDNA clone IMAGE:4179188), partial cds.
ACCESSION BC016393
VERSION BC016393.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2077)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2077)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (31-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 12 Row: i Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..2077
/db_xref="H-InvDB:HIT000088984"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4179188"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
BASE COUNT 687 a 369 c 385 g 636 t
ORIGIN
1 gattgcagtg gcaaagctag gctaggtctt ggaggctggt gtaaggcgat gtgggtgaag
61 gcaggaggct gatggaaaga ctggggggaa gaaaagccga aatggattca cggtgccttg
121 gatgaaggac gagaggggaa ctgcaagctc cttcaactgg ttctgtccgg tgagaagtga
181 tcaagcttgg gctgacaaga ggctcaggga gccctcacgt tctttcgctt ttttacctgc
241 caatcaaact gctacaagac aacaccctga tctggcatgg acatcgcggg tccaagcctg
301 tagccccaaa tcggataatc tctgcagctg ataacaagca aaagagaagc caggcaacag
361 ccatattaaa gaagaaaaca atcaactctg agatccaact tagaaataat gtttcattca
421 agataaggct cgtggcttag gagattgtga cctggcttgc atcattctaa gacttctatc
481 gtctgttttc aaaacccaag gaggacctcc ttttctgtgt gatagttcct catgctttgc
541 cagccactgg gtctttaagg aagcttgcca agagttcccg gctgggaagg acagttcgag
601 ttcatcatag acaatgagct ggcaccacag tttaagtgac tcaccaacct ggttgcccac
661 ttcaaaatgt caagaaccac actatctaat tgaaagaact gtgttttagc aaagtgtaat
721 tggatcgcct ggcaagatca tctcaaacta tgtctctgac cttgcctttc agtggctatt
781 ttgagcacaa gaggagaaag gaaatgattc ctgaattata tcttgttttt aaaaattaag
841 attaattaat acttggtttt atgttcattc cattgtagga acttagtgat tattacaaaa
901 cagtcaaaat aggtcatagc aaaatgaacg tttaagatta ggttaaaaca ttcctctgaa
961 attttagtat tcacttttga agtgtcaatt actatatttc tgtaatttct catttttttc
1021 ttggcttaga gtcaagatga aaaatgatat ttgaatcaaa gacattgttt tgttatatag
1081 ccactccttt ctaaaatgca aatccaccct cccctcacca atgctttatt ctttgtgcgc
1141 gcacacacac acacacacac acacacacac acacacacac acacagacat acacagaacc
1201 agcacccaaa tggtagagga ggtccttcca agacttctag gacctggatc atgtaagcag
1261 tagatgagaa aatgaagtaa gagatataga gtaataacaa taaaagtcaa tgatttcatt
1321 ttacaaaaaa gtcattgtgt agtactcaga tatttttaag agcaagtatt attatgacta
1381 aagtatatta tacttctaaa ttattatgat tctcatctaa tttcaagcca cacataggcg
1441 ccatttgaaa gcattttgtg ttacaaccta tcaacaaaaa tcaactaata gttttataac
1501 gtgcataggt ttaccccatg gggaattaaa atttttatct gcaagtattt ctgttgttgt
1561 gagactttag gacaagacaa catttggtgt taacatagaa gaatattcta tggctttttt
1621 agctttaaag ttcattactc taaaataaag tacacgtggt atttttttct tcctagtgtt
1681 ctcttattat atgtagagta ttttcggttg ttgtttttaa cgtatacatt atttttatta
1741 agtcatttca taaaagataa gatatatact aatagaccct tggttttctc ctaatttaat
1801 tatttcaagt caagcaaaat tgggcaattt tctttcagga aaaaaaaaat attgagcatg
1861 attttgaggt aaaactgatt atttacagca tcttttctct aataggctaa catttatgat
1921 ggatcttatt tcaaagttga ttattctcaa agaaaagtgg agatattaga atttccgagt
1981 aaattgcatt gttttaaaaa gtactttaat gcattgttca cattgttgcc agctattgac
2041 caaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa
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