LOCUS BC016051 1336 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens brix domain containing 5, mRNA (cDNA clone MGC:22954
IMAGE:4853072), complete cds.
ACCESSION BC016051
VERSION BC016051.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1336)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1336)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis Staudt
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 34 Row: c Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38569467.
FEATURES Location/Qualifiers
source 1..1336
/db_xref="H-InvDB:HIT000037465"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:22954 IMAGE:4853072"
/tissue_type="Primary B-Cells from Tonsils"
/clone_lib="NIH_MGC_48"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1336
/gene="BXDC5"
/gene_synonym="FLJ12475"
/gene_synonym="RP11-118B23.1"
/gene_synonym="RPF1"
/db_xref="GeneID:80135"
/db_xref="HGNC:HGNC:30350"
CDS 8..1057
/gene="BXDC5"
/gene_synonym="FLJ12475"
/gene_synonym="RP11-118B23.1"
/gene_synonym="RPF1"
/codon_start=1
/product="brix domain containing 5"
/protein_id="AAH16051.1"
/db_xref="GeneID:80135"
/db_xref="HGNC:HGNC:30350"
/translation="MAKAGDKSGSSGKKSLKRKAAAEELQEAAGAGDGATENGVQPPK
AAAFPPGFSISEIKNKQRRHLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVP
KTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLC
EQLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPT
AHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGR
QVATFHNQRDYIFFRFHRYIFRSEKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWV
HKPREMDTSRRKFHL"
BASE COUNT 504 a 254 c 271 g 307 t
ORIGIN
1 caagaccatg gcgaaagccg gggataagag cggcagcagc gggaagaaaa gtctaaaacg
61 gaaagccgct gccgaagaac ttcaggaggc tgcaggcgct ggggatgggg cgacggaaaa
121 cggggtccaa cccccgaaag cggctgcctt tccgccaggc tttagcattt cggagattaa
181 aaacaaacag cggcgacact taatgttcac gcggtggaaa cagcagcagc ggaaggaaaa
241 gttggcagct aagaaaaaac ttaaaaaaga aagagaggct cttggcgata aggctccacc
301 aaagcctgta cccaagacca ttgacaacca gcgagtgtat gatgaaacca cagtagaccc
361 taatgatgaa gaggtcgctt atgatgaagc tacagatgaa tttgcttctt acttcaacaa
421 acagacttct cccaagattc tcatcacaac atcagataga cctcatggga gaacagtacg
481 actctgtgaa cagctctcca cagttatacc aaactcacat gtttattaca gaagaggact
541 ggctctgaaa aaaattattc cacagtgcat cgcaagagat ttcacagacc tgattgttat
601 taatgaagat cgtaaaaccc caaatggact tattttgagt cacttgccaa atggcccaac
661 tgctcatttt aaaatgagca gtgttcgtct tcgtaaagaa attaagagaa gaggcaagga
721 ccccacagaa cacatacctg aaataattct gaataatttt acaacacggc tgggtcattc
781 aattggacgt atgtttgcat ctctctttcc tcataatcct caatttatcg gaaggcaggt
841 tgccacattc cacaatcaac gggattacat attcttcaga tttcacagat acatattcag
901 gagtgaaaag aaagtgggaa ttcaggaact tggaccacgt tttaccttaa aattaaggtc
961 tcttcagaaa ggaacctttg attctaaata tggagagtat gaatgggtcc ataagccccg
1021 ggaaatggat acaagtagaa gaaaattcca tttataaagt actgagagaa tgatattgga
1081 ttttgctgaa caggcctatc ttgaactttg gtaaattatt tttgacagaa tactcttttc
1141 aaaatggcat ttgctgattt cataaacctt tcacgtctgg acgaattacc aaatgccatg
1201 aattgccact gtgtgtttat gtagaaaata caaataaaag ttattttgat ggcaaaaaaa
1261 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1321 aaaaaaaaaa aaaaaa
//