LOCUS BC016027 2366 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 5, mRNA (cDNA
clone MGC:1516 IMAGE:3528578), complete cds.
ACCESSION BC016027
VERSION BC016027.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2366)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2366)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 8 Row: c Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13514826.
FEATURES Location/Qualifiers
source 1..2366
/db_xref="H-InvDB:HIT000037453"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1516 IMAGE:3528578"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2366
/gene="DDX5"
/gene_synonym="HUMP68"
/gene_synonym="p68"
/db_xref="GeneID:1655"
/db_xref="HGNC:HGNC:2746"
/db_xref="MIM:180630"
CDS 142..1986
/gene="DDX5"
/gene_synonym="HUMP68"
/gene_synonym="p68"
/codon_start=1
/product="DEAD (Asp-Glu-Ala-Asp) box polypeptide 5"
/protein_id="AAH16027.1"
/db_xref="GeneID:1655"
/db_xref="HGNC:HGNC:2746"
/db_xref="MIM:180630"
/translation="MSGYSSDRDRGRDRGFGAPRFGGSRAGPLSGKKFGNPGEKLVKK
KWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFP
ANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQP
FLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGV
EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL
MWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLME
EIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKA
PILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNI
KQVSDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTF
RDRENYDRGYSSLLKRDFGAKTQNGVYSAANYTNGSFGSNFVSAGIQTSFRTGNPTGT
YQNGYDSTQQYGSNVPNMHNGMNQQAYAYPATAAAPMIGYPMPTGYSQ"
BASE COUNT 771 a 430 c 553 g 612 t
ORIGIN
1 gtgcagcttc ggctggtgtc atcggtgtcc ttcctccgct gccgcccccg caaggcttcg
61 ccgtcatcga ggccatttcc agcgacttgt cgcacgcttt tctatatact tcgttccccg
121 ccaaccgcaa ccattgacgc catgtcgggt tattcgagtg accgagaccg cggccgggac
181 cgagggtttg gtgcacctcg atttggagga agtagggcag ggcccttatc tggaaagaag
241 tttggaaacc ctggggagaa attagttaaa aagaagtgga atcttgatga gctgcctaaa
301 tttgagaaga atttttatca agagcaccct gatttggcta ggcgcacagc acaagaggtg
361 gaaacataca gaagaagcaa ggaaattaca gttagaggtc acaactgccc gaagccagtt
421 ctaaattttt atgaagccaa tttccctgca aatgtcatgg atgttattgc aagacagaat
481 ttcactgaac ccactgctat tcaagctcag ggatggccag ttgctctaag tggattggat
541 atggttggag tggcacagac tggatctggg aaaacattgt cttatttgct tcctgccatt
601 gtccacatca atcatcagcc attcctagag agaggcgatg ggcctatttg tttggtgctg
661 gcaccaactc gggaactggc ccaacaggtg cagcaagtag ctgctgaata ttgtagagca
721 tgtcgcttga agtctacttg tatctacggt ggtgctccta agggaccaca aatacgtgat
781 ttggagagag gtgtggaaat ctgtattgca acacctggaa gactgattga ctttttagag
841 tgtggaaaaa ccaatctgag aagaacaacc taccttgtcc ttgatgaagc agatagaatg
901 cttgatatgg gctttgaacc ccaaataagg aagattgtgg atcaaataag acctgatagg
961 caaactctaa tgtggagtgc gacttggcca aaagaagtaa gacagcttgc tgaagatttc
1021 ctgaaagact atattcatat aaacattggt gcacttgaac tgagtgcaaa ccacaacatt
1081 cttcagattg tggatgtgtg tcatgacgta gaaaaggatg aaaaacttat tcgtctaatg
1141 gaagagatca tgagtgagaa ggagaataaa accattgttt ttgtggaaac caaaagaaga
1201 tgtgatgagc ttaccagaaa aatgaggaga gatgggtggc ctgccatggg tatccatggt
1261 gacaagagtc aacaagagcg tgactgggtt ctaaatgaat tcaaacatgg aaaagctcct
1321 attctgattg ctacagatgt ggcctccaga gggctagatg tggaagatgt gaaatttgtc
1381 atcaattatg actaccctaa ctcctcagag gattatattc atcgaattgg aagaactgct
1441 cgcagtacca aaacaggcac agcatacact ttctttacac ctaataacat aaagcaagtg
1501 agcgacctta tctctgtgct tcgtgaagct aatcaagcaa ttaatcccaa gttgcttcag
1561 ttggtcgaag acagaggttc aggtcgttcc aggggtagag gaggcatgaa ggatgaccgt
1621 cgggacagat actctgcggg caaaaggggt ggatttaata cctttagaga cagggaaaat
1681 tatgacagag gttactctag cctgcttaaa agagattttg gggcaaaaac tcagaatggt
1741 gtttacagtg ctgcaaatta caccaatggg agctttggaa gtaattttgt gtctgctggt
1801 atacagacca gttttaggac tggtaatcca acagggactt accagaatgg ttatgatagc
1861 actcagcaat acggaagtaa tgttccaaat atgcacaatg gtatgaacca acaggcatat
1921 gcatatcctg ctactgcagc tgcacctatg attggttatc caatgccaac aggatattcc
1981 caataagact ttagaagtat atgtaaatgt ctgtttttca taattgctct ttatattgtg
2041 tgttatctga caagatagtt atttaagaaa catgggaatt gcagaaatga ctgcagtgca
2101 gcagtaatta tggtgcactt tttcgctatt taagttggat atttctctac attcctgaaa
2161 caatttttag gttttttttg tactagaaaa tgcaggcagt gttttcacaa aagtaaatgt
2221 acagtgattt gaaatacaat aaatgaaggc aatgcatggc cttccaataa aaaatatttg
2281 aagactgaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2341 aaaaaaaaaa aaaaaaaaaa aaaaaa
//