LOCUS BC015997 1546 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens ubiquitin-conjugating enzyme E2D 1 (UBC4/5 homolog,
yeast), mRNA (cDNA clone MGC:27216 IMAGE:4305900), complete cds.
ACCESSION BC015997
VERSION BC015997.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1546)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1546)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 38 Row: c Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 33149307.
FEATURES Location/Qualifiers
source 1..1546
/db_xref="H-InvDB:HIT000037440"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:27216 IMAGE:4305900"
/tissue_type="Skin, melanotic melanoma, high MDR."
/clone_lib="NIH_MGC_62"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1546
/gene="UBE2D1"
/gene_synonym="E2(17)KB1"
/gene_synonym="UBC4/5"
/gene_synonym="UBCH5"
/gene_synonym="UBCH5A"
/db_xref="GeneID:7321"
/db_xref="HGNC:HGNC:12474"
/db_xref="MIM:602961"
CDS 199..642
/gene="UBE2D1"
/gene_synonym="E2(17)KB1"
/gene_synonym="UBC4/5"
/gene_synonym="UBCH5"
/gene_synonym="UBCH5A"
/codon_start=1
/product="ubiquitin-conjugating enzyme E2D 1 (UBC4/5
homolog, yeast)"
/protein_id="AAH15997.1"
/db_xref="GeneID:7321"
/db_xref="HGNC:HGNC:12474"
/db_xref="MIM:602961"
/translation="MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSA
YQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKV
LLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM"
BASE COUNT 483 a 314 c 268 g 481 t
ORIGIN
1 ggggacactc gcgcacactc gcgctcgggc gcacacggag cagggaccgg cgcccggagc
61 gagccaggga gcggctaacc ggggacccac cgcgcggagc cagcctagct gccagcgagc
121 ccaacccgcg acgacccacg cccctgagcc ccgcagccga cccctgccgg ccggtgtccc
181 caccgccatc cctgacccat ggcgctgaag aggattcaga aagaattgag tgatctacag
241 cgcgatccac ctgctcactg ttcagctgga cctgtgggag atgacttgtt ccactggcaa
301 gccactatta tggggcctcc tgatagcgca tatcaaggtg gagtcttctt tctcactgta
361 cattttccga cagattatcc ttttaaacca ccaaagattg ctttcacaac aaaaatttac
421 catccaaaca taaacagtaa tggaagtatt tgtctcgata ttctgaggtc acaatggtca
481 ccagctctga ctgtatcaaa agttttattg tccatatgtt ctctactttg tgatcctaat
541 ccagatgacc ccttagtacc agatattgca caaatctata aatcagacaa agaaaaatac
601 aacagacatg caagagaatg gactcagaaa tatgcaatgt aaaaatcaaa aacattttca
661 tatataccag agtactgtaa aatctaggtt tttttcaaca ttagcagtaa attgagcact
721 gtttactgtt tcattgtacc atgaaaccat ttgattttta cccattttaa atgtgtttct
781 gaagcaagac aaaacaaact tccaaaaata cccttaagac tgtgatgaga gcatttatca
841 ttttgtatgc attgagaaag acatttatta tggtttttaa gatacttgga catctgcatc
901 ttcagcttac aagatctaca atgcagctga aaagcaacca aattattttt tgctgaaact
961 agatgttttt acatgagaaa tactgtatgt gttgtctaag atgtcagttt tataaatctg
1021 tattcagatt tcattctttg ttagctcact ttataatttg tattttttta ctgtatagac
1081 taaatatatt ctatttacat gtatgtcaac tcattacttt tttcctgtga acagtattga
1141 aaaaccccaa cggctgataa ttaagtgaat taactgtgtc tcccttgtct taggatattc
1201 tgtagattga ttgcagattt cttaaatctg aaatgatctt tacactgtaa ttctcagcat
1261 actgattatg gagaaacact tgttttgatt ttgttatact tgacttaact ttattgcaat
1321 gtgaattaat tgcactgcta agtaggaaga tgtgtaactt ttatttgttg ctattcacat
1381 ttgaattttt tcctgtatag gcaatattat attgacacct tttacagatc ttactgtagc
1441 tttttccata taaataaaat gctttttcta ctatttgtct tgattactta aaaaaataaa
1501 aatataagta aggattaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa
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