LOCUS BC015895 1989 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens snail homolog 2 (Drosophila), mRNA (cDNA clone
MGC:17388 IMAGE:3911047), complete cds.
ACCESSION BC015895
VERSION BC015895.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1989)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1989)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 15 Row: h Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 24497625.
FEATURES Location/Qualifiers
source 1..1989
/db_xref="H-InvDB:HIT000037383"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17388 IMAGE:3911047"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1989
/gene="SNAI2"
/gene_synonym="MGC10182"
/gene_synonym="SLUGH1"
/gene_synonym="WS2D"
/db_xref="GeneID:6591"
/db_xref="HGNC:HGNC:11094"
/db_xref="MIM:602150"
CDS 133..939
/gene="SNAI2"
/gene_synonym="MGC10182"
/gene_synonym="SLUGH1"
/gene_synonym="WS2D"
/codon_start=1
/product="snail homolog 2 (Drosophila)"
/protein_id="AAH15895.1"
/db_xref="GeneID:6591"
/db_xref="HGNC:HGNC:11094"
/db_xref="MIM:602150"
/translation="MPRSFLVKKHFNASKKPNYSELDTHTVIISPYLYESYSMPVIPQ
PEILSSGAYSPITVWTTAAPFHAQLPNGLSPLSGYSSSLGRVSPPPPSDTSSKDHSGS
ESPISDEEERLQSKLSDPHAIEAEKFQCNLCNKTYSTFSGLAKHKQLHCDAQSRKSFS
CKYCDKEYVSLGALKMHIRTHTLPCVCKICGKAFSRPWLLQGHIRTHTGEKPFSCPHC
NRAFADRSNLRAHLQTHSDVKKYQCKNCSKTFSRMSLLHKHEESGCCVAH"
BASE COUNT 607 a 460 c 376 g 546 t
ORIGIN
1 gccggcccgt ccgtctgccg cacctgagca cggcccctgc ccgagcctgg cccgccgcga
61 tgctgtaggg accgccgtgt cctcccgccg gaccgttatc cgcgccgggc gcccgccaga
121 cccgctggca agatgccgcg ctccttcctg gtcaagaagc atttcaacgc ctccaaaaag
181 ccaaactaca gcgaactgga cacacataca gtgattattt ccccgtatct ctatgagagt
241 tactccatgc ctgtcatacc acaaccagag atcctcagct caggagcata cagccccatc
301 actgtgtgga ctaccgctgc tccattccac gcccagctac ccaatggcct ctctcctctt
361 tccggatact cctcatcttt ggggcgagtg agtccccctc ctccatctga cacctcctcc
421 aaggaccaca gtggctcaga aagccccatt agtgatgaag aggaaagact acagtccaag
481 ctttcagacc cccatgccat tgaagctgaa aagtttcagt gcaatttatg caataagacc
541 tattcaactt tttctgggct ggccaaacat aagcagctgc actgcgatgc ccagtctaga
601 aaatctttca gctgtaaata ctgtgacaag gaatatgtga gcctgggcgc cctgaagatg
661 catattcgga cccacacatt accttgtgtt tgcaagatct gcggcaaggc gttttccaga
721 ccctggttgc ttcaaggaca cattagaact cacacggggg agaagccttt ttcttgccct
781 cactgcaaca gagcatttgc agacaggtca aatctgaggg ctcatctgca gacccattct
841 gatgtaaaga aataccagtg caaaaactgc tccaaaacct tctccagaat gtctctcctg
901 cacaaacatg aggaatctgg ctgctgtgta gcacactgag tgacgcaatc aatgtttact
961 cgaacagaat gcatttcttc actccgaagc caaatgacaa ataaagtcca aaggcatttt
1021 ctcctgtgct gaccaaccaa ataatatgta tagacacaca cacatatgca cacacacaca
1081 cacacaccca cagagagaga gctgcaagag catggaattc atgtgtttaa agataatcct
1141 ttccatgtga agtttaaaat tactatatat ttgctgatgg ctagattgag agaataaaag
1201 acagtaacct ttctcttcaa agataaaatg aaaagcacat tgcatctttt cttcctaaaa
1261 aaatgcaaag atttacattg ctgccaaatc atttcaactg aaaagaacag tattgctttg
1321 taatagagtc tgtaatagga tttcccatag gaagagatct gccagacgcg aactcaggtg
1381 ccttaaaaag tattccaagt ttactccatt acatgtcggt tgtctggttg ccattgttga
1441 actaaagcct ttttttgatt acctgtagtg ctttaaagta tatttttaaa agggaggaaa
1501 aaaataacaa gaacaaaaca caggagaatg tattaaaagt atttttgttt tgttttgttt
1561 ttgccaatta acagtatgtg ccttggggga ggagggaaag attagctttg aacattcctg
1621 gcgcatgctc cattgtctta ctattttaaa acattttaat aatttttgaa aattaattaa
1681 agatgggaat aagtgcaaaa gaggattctt acaaattcat taatgtactt aaactatttc
1741 aaatgcatac cacaaatgca ataatacaat accccttcca agtgcctttt taaattgtat
1801 agttgatgag tcaatgtaaa tttgtgttta tttttatatg attgaatgag ttctgtatga
1861 aactgagatg ttgtctatag ctatgtctat aaacaacctg aagacttgtg aaatcaatgt
1921 ttctttttta aaaaacaatt ttcaagtttt ttttacaata aacagttttg atttaaaaaa
1981 aaaaaaaaa
//