LOCUS BC015877 1924 bp mRNA linear HUM 06-OCT-2003 DEFINITION Homo sapiens cadherin 19, type 2, mRNA (cDNA clone MGC:27490 IMAGE:4716394), complete cds. ACCESSION BC015877 VERSION BC015877.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1924) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1924) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (15-OCT-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: CLONTECH cDNA Library Preparation: CLONTECH Laboratories, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 38 Row: o Column: 10. FEATURES Location/Qualifiers source 1..1924 /db_xref="H-InvDB:HIT000037371" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:27490 IMAGE:4716394" /tissue_type="Liver" /clone_lib="NIH_MGC_76" /lab_host="DH10B" /note="Vector: pDNR-LIB" gene 1..1924 /gene="CDH19" /gene_synonym="CDH7" /gene_synonym="CDH7L2" /db_xref="GeneID:28513" /db_xref="MIM:603016" CDS 355..1527 /gene="CDH19" /gene_synonym="CDH7" /gene_synonym="CDH7L2" /codon_start=1 /product="CDH19 protein" /protein_id="AAH15877.1" /db_xref="GeneID:28513" /db_xref="MIM:603016" /translation="MNTTSHHIGQLRSDLDNGNNSFQYKLLGAGAGSTFIIDERTGDI YAIQKLDREERSLYILRAQVIDIATGRAVEPESEFVIKVSDINDNEPKFLDEPYEAIV PEMSPEGTLVIQVTASDADDPSSGNNARLLYSLLQGQPYFSVEPTTGVIRISSKMDRE LQDEYWVIIQAKDMIGQPGALSGTTSVLIKLSDVNDNKPIFKESLYRLTVSESAPTGT SIGTIMAYDNDIGENAEMDYSIEEDDSQTFDIITNHETQEGIVILKKKVDFEHQNHYG IRAKVKNHHVPEQLMKYHTEASTTFIKIQVEDVDEPPLFLLPYYVFEVFEETPQGSFV GVVSATDPDNRKSPIRYSITRSKVFNINDNGTITTSNSLDREISAWYNLSITATEK" misc_feature 391..627 /gene="CDH19" /gene_synonym="CDH7" /gene_synonym="CDH7L2" /note="CA; Region: Cadherin repeats. Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium" /db_xref="CDD:smart00112" misc_feature 697..951 /gene="CDH19" /gene_synonym="CDH7" /gene_synonym="CDH7L2" /note="CA; Region: Cadherin repeats. Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium" /db_xref="CDD:smart00112" misc_feature 970..1275 /gene="CDH19" /gene_synonym="CDH7" /gene_synonym="CDH7L2" /note="cadherin; Region: Cadherin domain" /db_xref="CDD:pfam00028" misc_feature 1312..1518 /gene="CDH19" /gene_synonym="CDH7" /gene_synonym="CDH7L2" /note="cadherin; Region: Cadherin domain" /db_xref="CDD:pfam00028" BASE COUNT 652 a 352 c 388 g 532 t ORIGIN 1 ggggagagaa cccaaaatag cattgagtaa gcagtgacat actgacagtg ttgtggtact 61 aaaagcacaa gcgtctgtaa ctctgggcaa tggggcacat cgagagtttg ctgagaagac 121 tgtgaagcaa aaagaagaaa gtttttccta ctcttcctta tgtgtccaac acgaagtttg 181 ctgttcagtt ttcacagaac ttctagaagt tgaagttaca aaggaattcc tctcctatgg 241 ccttgtcttg gagcaacaga aaactctcaa acaaagaaag tcaagcagcc agtgcgatct 301 catttgagag tgaagcgtgg ctgggtgtgg aaccaatttt ttgtaccaga ggaaatgaat 361 acgactagtc atcacatcgg ccagctaaga tctgatttag acaatggaaa caattctttc 421 cagtacaagc ttttgggagc tggagctgga agtactttta tcattgatga aagaacaggt 481 gacatatatg ccatacagaa gcttgataga gaggagcgat ccctctacat cttaagagcc 541 caggtaatag acatcgctac tggaagggct gtggaacctg agtctgagtt tgtcatcaaa 601 gtttcggata tcaatgacaa tgaaccaaaa ttcctagatg aaccttatga ggccattgta 661 ccagagatgt ctccagaagg aacattagtt atccaggtga cagcaagtga tgctgacgat 721 ccctcaagtg gtaataatgc tcgtctcctc tacagcttac ttcaaggcca gccatatttt 781 tctgttgaac caacaacagg agtcataaga atatcttcta aaatggatag agaactgcaa 841 gatgagtatt gggtaatcat tcaagccaag gacatgattg gtcagccagg agcgttgtct 901 ggaacaacaa gtgtattaat taaactttca gatgttaatg acaataagcc tatatttaaa 961 gaaagtttat accgcttgac tgtctctgaa tctgcaccca ctgggacttc tataggaaca 1021 atcatggcat atgataatga cataggagag aatgcagaaa tggattacag cattgaagag 1081 gatgattcgc aaacatttga cattattact aatcatgaaa ctcaagaagg aatagttata 1141 ttaaaaaaga aagtggattt tgagcaccag aaccactacg gtattagagc aaaagttaaa 1201 aaccatcatg ttcctgagca gctcatgaag taccacactg aggcttccac cactttcatt 1261 aagatccagg tggaagatgt tgatgagcct cctcttttcc tccttccata ttatgtattt 1321 gaagtttttg aagaaacccc acagggatca tttgtaggcg tggtgtctgc cacagaccca 1381 gacaatagga aatctcctat caggtattct attactagga gcaaagtgtt caatatcaat 1441 gataatggta caatcactac aagtaactca ctggatcgtg aaatcagtgc ttggtacaac 1501 ctaagtatta cagccacaga aaaatgatat agggatgctg tattccttga agattacatt 1561 tcaaagagat ggtcaccatt acttgataaa tacaatcctg gatcctaaag cttccaagaa 1621 acttgttgaa cttttgaaag atttccatac gcttcaaagg gacaaagaaa aaacttacat 1681 acaaagcttt ttttttccct ctctctctct ctttctctgt gtgtgtgtgt gtgtgtgtgt 1741 gtgtgtgtat gaatgctctg agaaaaggaa ggaaagaaaa aatattttcc cttgctttca 1801 acaagtacaa ggcctctaat ttttaatttg ttttgttctt tcaaattatc attgcaaata 1861 gtacatatat tttaaataaa aacactaaaa caaactaaaa aaaaaaaaaa aaaaaaaaaa 1921 aaaa //