LOCUS BC015808 1445 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens RAB38, member RAS oncogene family, mRNA (cDNA clone
MGC:9473 IMAGE:3916084), complete cds.
ACCESSION BC015808
VERSION BC015808.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1445)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1445)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 15 Row: k Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 11641236.
FEATURES Location/Qualifiers
source 1..1445
/db_xref="H-InvDB:HIT000037339"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9473 IMAGE:3916084"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1445
/gene="RAB38"
/gene_synonym="NY-MEL-1"
/gene_synonym="rrGTPbp"
/db_xref="GeneID:23682"
/db_xref="HGNC:HGNC:9776"
/db_xref="MIM:606281"
CDS 50..685
/gene="RAB38"
/gene_synonym="NY-MEL-1"
/gene_synonym="rrGTPbp"
/codon_start=1
/product="RAB38, member RAS oncogene family"
/protein_id="AAH15808.1"
/db_xref="GeneID:23682"
/db_xref="HGNC:HGNC:9776"
/db_xref="MIM:606281"
/translation="MQAPHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGV
DFALKVLHWDPETVVRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVA
KWKNDLDSKLSLPNGKPVSVVLLANKCDQGKDVLMNNGLKMDQFCKEHGFVGWFETSA
KENINIDEASRCLVKHILANECDLMESIEPDVVKPHLTSTKVASCSGCAKS"
BASE COUNT 393 a 325 c 331 g 396 t
ORIGIN
1 caggctgcgc ttccctggtc aggcacggca cgtctggccg gccgccagga tgcaggcccc
61 gcacaaggag cacctgtaca agttgctggt gattggcgac ctgggcgtgg ggaagaccag
121 tatcatcaag cgctacgtgc accagaactt ctcctcgcac taccgggcca caatcggcgt
181 ggacttcgcg ctcaaggtgc tccactggga cccggagact gtggtgcgcc tgcagctctg
241 ggatatcgca ggtcaagaaa gatttggaaa catgacgagg gtctattacc gagaagctat
301 gggtgcattt attgtcttcg atgtcaccag gccagccaca tttgaagcag tggcaaagtg
361 gaaaaatgat ttggactcca agttaagtct ccctaatggc aaaccggttt cagtggtttt
421 gttggccaac aaatgtgacc aggggaagga tgtgctcatg aacaatggcc tcaagatgga
481 ccagttctgc aaggagcacg gtttcgtagg atggtttgaa acatcagcaa aggaaaatat
541 aaacattgat gaagcctcca gatgcctggt gaaacacata cttgcaaatg agtgtgacct
601 aatggagtct attgagccgg acgtcgtgaa gccccatctc acatcaacca aggttgccag
661 ctgctctggc tgtgccaaat cctagtaggc acctttgctg gtgtctggta ggaatgacct
721 cattgttcca caaattgtgc ctctattttt accattttgg gtaaacgtca ggatagatat
781 accacatgtg gcaagccaaa gatctatgcc tctgtttttt caatgagaga gaaatagcaa
841 atgttctttc tatgctttcc tcaccatcat cacagtgttt acaaactttt gaaaatattt
901 agtctgttac aaacttctgt catgtagctg accaaaatcc tgcagggcca cagtcggcac
961 tgttatttgc ttcttttaat cagcaaaggc ctcaagtctt aaaataaaag gggagaagaa
1021 caaactagct gtcaagtcaa ggactggctt tcaccttgcc ctggtgtctt tttccagatt
1081 tcaatatatt ctctgatggc ctgacaggcc tattaagtag atgtgatatt ttctcccaag
1141 atgacctcca ttctcggcag acctaagagt tgcctctgag ttagctcttt ggaatcgtga
1201 acacaggtgt gctatattgt ccttgtccta actgtcactt gccatggcct gaatgttggc
1261 ttaactgaat attgtatgaa aagacatgcc tccatatgtg cctttctgtt agctttctct
1321 gactcaagct gtggggctcc tctatacatg ctatacatgt aatatatatt atatatattt
1381 ttgcaagtga acaataaaac attaaaagat gctgtttccc tatttaaaaa aaaaaaaaaa
1441 aaaaa
//