LOCUS BC015789 1878 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens high mobility group AT-hook 1, mRNA (cDNA clone
MGC:23654 IMAGE:4866014), complete cds.
ACCESSION BC015789
VERSION BC015789.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1878)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1878)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 34 Row: j Column: 21.
FEATURES Location/Qualifiers
source 1..1878
/db_xref="H-InvDB:HIT000088807"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:23654 IMAGE:4866014"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_15"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1878
/gene="HMGA1"
/gene_synonym="HMG-R"
/gene_synonym="MGC12816"
/gene_synonym="MGC4242"
/gene_synonym="MGC4854"
/db_xref="GeneID:3159"
/db_xref="HGNC:HGNC:5010"
/db_xref="MIM:600701"
CDS 212..502
/gene="HMGA1"
/gene_synonym="HMG-R"
/gene_synonym="MGC12816"
/gene_synonym="MGC4242"
/gene_synonym="MGC4854"
/codon_start=1
/product="high mobility group AT-hook 1"
/protein_id="AAH15789.1"
/db_xref="GeneID:3159"
/db_xref="HGNC:HGNC:5010"
/db_xref="MIM:600701"
/translation="MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPK
RPRGRPKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ"
BASE COUNT 386 a 633 c 492 g 367 t
ORIGIN
1 ggtccccagc agcaagaggt ggggggaggc accagatggt atgagagctt ccagggagac
61 ccgccaagat ctccaggcag gccgggccag gctctctggg attccggact ggcttcgccc
121 aactggaacc ccctcgatga gggggcccca ggcagacctt atatgagcat cccagccatc
181 actcttccac ctgctcctta gagaagggaa gatgagtgag tcgagctcga agtccagcca
241 gcccttggcc tccaagcagg aaaaggacgg cactgagaag cggggccggg gcaggccgcg
301 caagcagcct ccgaaggagc ccagcgaagt gccaacacct aagagacctc ggggccgacc
361 aaagggaagc aaaaacaagg gtgctgccaa gacccggaaa accaccacaa ctccaggaag
421 gaaaccaagg ggcagaccca aaaaactgga gaaggaggaa gaggagggca tctcgcagga
481 gtcctcggag gaggagcagt gacccatgcg tgccgcctgc tcctcactgg aggagcagct
541 tccttctggg actggacagc tttgctccgc tcccaccgcc cccgcccctt ccccaggccc
601 accatcacca ccgcctctgg ccgccacccc catcttccac ctgtgccctc accaccacac
661 tacacagcac accagccgct gcagggctcc catgggctga gtggggagca gttttcccct
721 ggcctcagtt cccagctccc cccgcccacc cacgcataca cacatgccct cctggacaag
781 gctaacatcc cacttagccg caccctgcac ctgctgcgtc cccactccct tggtggtggg
841 gacattgctc tctgggcttt tggtttgggg gcgccctctc tgctccttca ctgttccctc
901 tggcttccca tagtggggcc tgggagggtt cccctggcct taaaaggggc ccaagcccca
961 tctcatcctg gcacgcccta ctccactgcc ctggcagcag caggtgtggc caatggaggg
1021 gggtgctggc ccccaggatt cccccagcca aactgtcttt gtcaccacgt ggggctcact
1081 tttcatcctt ccccaacttc cctagtcccc gtactaggtt ggacagcccc cttcggctac
1141 aggaaggcag gaggggtgag tcccctactc cctcttcact gtggccacag cccccttgcc
1201 ctccgcctgg gatctgagta catattgtgg tgatggagat gcagtcactt attgtccagg
1261 tgaggcccaa gagccctgtg gccgccacct gaggtgggct ggggctgctc ccctaaccct
1321 actttgcttc cgccactcag ccatttcccc ctcctcagat ggggcaccaa taacaaggag
1381 ctcaccctgc ccgctcccaa cccccctcct gctcctccct gccccccaag gttctggttc
1441 catttttcct ctgttcacaa actacctctg gacagttgtg ttgttttttg ttcaatgttc
1501 cattcttcga catccgtcat tgctgctgct accagcgcca aatgttcatc ctcattgcct
1561 cctgttctgc ccacgatccc ctcccccaag atactctttg tggggaagag gggctggggc
1621 atggcaggct gggtgaccga ctaccccagt cccagggaag gtggggccct gcccctagga
1681 tgctgcagca gagtgagcaa gggggcccga atcgaccata aagggtgtag gggccacctc
1741 ctccccctgt tctgttgggg aggggtagcc atgatttgtc ccagcctggg gctccctctc
1801 tggtttccta tttgcagtta cttgaataaa aaaaatatcc ttttctggaa aaaaaaaaaa
1861 aaaaaaaaaa aaaaaaaa
//