LOCUS BC015752 2235 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens interferon regulatory factor 4, mRNA (cDNA clone
MGC:23069 IMAGE:4861223), complete cds.
ACCESSION BC015752
VERSION BC015752.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2235)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2235)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 34 Row: g Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4505286.
FEATURES Location/Qualifiers
source 1..2235
/db_xref="H-InvDB:HIT000037296"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:23069 IMAGE:4861223"
/tissue_type="Skin, melanotic melanoma, high MDR."
/clone_lib="NIH_MGC_49"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2235
/gene="IRF4"
/gene_synonym="LSIRF"
/db_xref="GeneID:3662"
/db_xref="HGNC:HGNC:6119"
/db_xref="MIM:601900"
CDS 74..1429
/gene="IRF4"
/gene_synonym="LSIRF"
/codon_start=1
/product="interferon regulatory factor 4"
/protein_id="AAH15752.1"
/db_xref="GeneID:3662"
/db_xref="HGNC:HGNC:6119"
/db_xref="MIM:601900"
/translation="MNLEGGGRGGEFGMSAVSCGNGKLRQWLIDQIDSGKYPGLVWEN
EEKSIFRIPWKHAGKQDYNREEDAALFKAWALFKGKFREGIDKPDPPTWKTRLRCALN
KSNDFEELVERSQLDISDPYKVYRIVPEGAKKGAKQLTLEDPQMSMSHPYTMTTPYPS
LPAQQVHNYMMPPLDRSWRDYVPDQPHPEIPYQCPMTFGPRGHHWQGPACENGCQVTG
TFYACAPPESQAPGVPTEPSIRSAEALAFSDCRLHICLYYREILVKELTTSSPEGCRI
SHGHTYDASNLDQVLFPYPEDNGQRKNIEKLLSHLERGVVLWMAPDGLYAKRLCQSRI
YWDGPLALCNDRPNKLERDQTCKLFDTQQFLSELQAFAHHGRSLPRFQVTLCFGEEFP
DPQRQRKLITAHVEPLLARQLYYFAQQNSGHFLRGYDLPEHISNPEDYHRSIRHSSIQ
E"
BASE COUNT 559 a 592 c 605 g 479 t
ORIGIN
1 ctccgagtcc agggcgagtg cagagcagag cgggcggagg accccgggcg cgggcgcgga
61 cggcacgcgg ggcatgaacc tggagggcgg cggccgaggc ggagagttcg gcatgagcgc
121 ggtgagctgc ggcaacggga agctccgcca gtggctgatc gaccagatcg acagcggcaa
181 gtaccccggg ctggtgtggg agaacgagga gaagagcatc ttccgcatcc cctggaagca
241 cgcgggcaag caggactaca accgcgagga ggacgccgcg ctcttcaagg cttgggcact
301 gtttaaagga aagttccgag aaggcatcga caagccggac cctcccacct ggaagacgcg
361 cctgcggtgc gctttgaaca agagcaatga ctttgaggaa ctggttgagc ggagccagct
421 ggacatctca gacccgtaca aagtgtacag gattgttcct gagggagcca aaaaaggagc
481 caagcagctc accttggagg acccgcagat gtccatgagc cacccctaca ccatgacaac
541 gccttaccct tcgctcccag cccagcaggt tcacaactac atgatgccac ccctcgaccg
601 aagctggagg gactacgtcc cggatcagcc acacccggaa atcccgtacc aatgtcccat
661 gacgtttgga ccccgcggcc accactggca aggcccagct tgtgaaaatg gttgccaggt
721 gacaggaacc ttttatgctt gtgccccacc tgagtcccag gctcccggag tccccacaga
781 gccaagcata aggtctgccg aagccttggc gttctcagac tgccggctgc acatctgcct
841 gtactaccgg gaaatcctcg tgaaggagct gaccacgtcc agccccgagg gctgccggat
901 ctcccatgga catacgtatg acgccagcaa cctggaccag gtcctgttcc cctacccaga
961 ggacaatggc cagaggaaaa acattgagaa gctgctgagc cacctggaga ggggcgtggt
1021 cctctggatg gcccccgacg ggctctatgc gaaaagactg tgccagagca ggatctactg
1081 ggacgggccc ctggcgctgt gcaacgaccg gcccaacaaa ctggagagag accagacctg
1141 caagctcttt gacacacagc agttcttgtc agagctgcaa gcgtttgctc accacggccg
1201 ctccctgcca agattccagg tgactctatg ctttggagag gagtttccag accctcagag
1261 gcaaagaaag ctcatcacag ctcacgtaga acctctgcta gccagacaac tatattattt
1321 tgctcaacaa aacagtggac atttcctgag gggctacgat ttaccagaac acatcagcaa
1381 tccagaagat taccacagat ctatccgcca ttcctctatt caagaatgaa aaatgtcaag
1441 atgagtggtt ttctttttcc tttttttttt ttttttgata cggagatacg gggtcttgct
1501 ctgtctccca ggctggagtg cagtgacaca atctcagctc actgtgacct ccgcctcctg
1561 ggttcaagag actctcctgc ctcagcctcc ctggtagctg ggattacagg tgtgagccac
1621 tgcacccacc caagacaagt gattttcatt gtaaatattt gactttagtg aaagcgtcca
1681 attgactgcc ctcttactgt tttgaggaac tcagaagtgg agatttcagt tcagcggttg
1741 aggagaattg cggcgagaca agcatggaaa atcagtgaca tctgattggc agatgagctt
1801 atttcaaaag gaagggtggc tttgcatttc ttgtgttcta tagactgcca tcattgatga
1861 tcactgtgaa aattgaccaa gtgatgtgtt tacatttact gaaatgcgct ctttaatttg
1921 ttgtagatta ggtcttgctg gaagacagag aaaacttgcc tttcagtatt gacactgact
1981 agagtgatga ctgcttgtag gtatgtctgt gccatttctc agggaagtaa gatgtaaatt
2041 gaagaagcct cacacgtaaa agaaatgtat taacgtatgt aggagctgca gttcttgtgg
2101 aagacacttg ctgagtgaag gaaatgaatc tttgactgaa gccgtgcctg tagccttggg
2161 gaggcccatc ccccacctgc cagcggtttc ctggtgtggg tccctctgct ccctctgaaa
2221 aaaaaaaaaa aaaaa
//