LOCUS BC015727 2750 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens solute carrier organic anion transporter family,
member 4A1, mRNA (cDNA clone MGC:22943 IMAGE:4908245), complete
cds.
ACCESSION BC015727
VERSION BC015727.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2750)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2750)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 34 Row: p Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 39777593.
FEATURES Location/Qualifiers
source 1..2750
/db_xref="H-InvDB:HIT000037276"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:22943 IMAGE:4908245"
/tissue_type="Pancreas, epithelioid carcinoma"
/clone_lib="NIH_MGC_42"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2750
/gene="SLCO4A1"
/gene_synonym="OATP-E"
/gene_synonym="OATP1"
/gene_synonym="OATP4A1"
/gene_synonym="OATPRP1"
/gene_synonym="POAT"
/db_xref="GeneID:28231"
/db_xref="HGNC:HGNC:10953"
CDS 164..2332
/gene="SLCO4A1"
/gene_synonym="OATP-E"
/gene_synonym="OATP1"
/gene_synonym="OATP4A1"
/gene_synonym="OATPRP1"
/gene_synonym="POAT"
/codon_start=1
/product="solute carrier organic anion transporter family,
member 4A1"
/protein_id="AAH15727.1"
/db_xref="GeneID:28231"
/db_xref="HGNC:HGNC:10953"
/translation="MPLHQLGDKPLTFPSPNSAMENGLDHTPPSRRASPGTPLSPGSL
RSAAHSPLDTSKQPLCQLWAEKHGARGTHEVRYISAGQSVACGWWAFAPPCLQVLNTP
KGILFFLCAAAFLQGMTVNGFINTVITSLERRYDLHSYQSGLIASSYDIAACLCLTFV
SYFGGSGHKPRWLGWGVLLMGTGSLVFALPHFTAGRYEVELDAGVRTCPANPGAVCAD
STSGLSRYQLVFMLGQFLHGVGATPLYTLGVTYLDENVKSSCSPVYIAIFYTAAILGP
AAGYLIGGALLNIYTEMGRRTELTTESPLWVGAWWVGFLGSGAAAFFTAVPILGYPRQ
LPGSQRYAVMRAAEMHQLKDSSRGEASNPDFGKTIRDLPLSIWLLLKNPTFILLCLAG
ATEATLITGMSTFSPKFLESQFSLSASEAATLFGYLVVPAGGGGTFLGGFFVNKLRLR
GSAVIKFCLFCTVVSLLGILVFSLHCPSVPMAGVTASYGGSLLPEGHLNLTAPCNAAC
SCQPEHYSPVCGSDGLMYFSLCHAGCPAATETNVDGQKVYRDCSCIPQNLSSGFGHAT
AGKCTSTCQRKPLLLVFIFVVIFFTFLSSIPALTATLRCVRDPQRSFALGIQWIVVRI
LGGIPGPIAFGWVIDKACLLWQDQCGQQGSCLVYQNSAMSRYILIMGLLYKVLGVLFF
AIACFLYKPLSESSDGLETCLPSQSSAPDSATDSQLQSSV"
BASE COUNT 498 a 888 c 793 g 571 t
ORIGIN
1 ggctgccggg gaggccagag cgtggagcgc tgcgcggcgc ggcggccggg ccctcgagac
61 ggggacggac acaccagccc ctcagatacc acttggccac tcccgctgag gccactccca
121 ctgcgtggct gaagcctcga ggtcaccagg cggaggcgcg gagatgcccc tgcatcagct
181 gggggacaag ccgctcacct tccccagccc caactcagcc atggaaaacg ggcttgacca
241 caccccaccc agcaggaggg catccccggg cacacccctg agccccggct ccctccgctc
301 cgctgcccat agccccctgg acaccagcaa gcagcccctc tgccagctct gggccgagaa
361 gcatggcgcc cgggggaccc atgaggtgcg gtacatctcg gccgggcaga gcgtggcgtg
421 cggctggtgg gccttcgcac cgccgtgcct gcaggtcctc aacacgccca agggcatcct
481 gttcttcctg tgtgcggccg cattcctgca ggggatgact gtgaatggct tcatcaacac
541 agtcatcacc tccctggagc gccgctatga cctgcacagc taccagagcg ggctcatcgc
601 cagctcctac gacattgccg cctgcctctg cctcaccttc gtcagctact tcgggggctc
661 agggcacaag ccgcgctggc tgggctgggg cgtgctgctt atgggcacgg gttcgctggt
721 gttcgcgctg ccccacttca cggctggccg ctatgaggtg gagttggacg cgggtgtcag
781 gacgtgccct gccaaccccg gcgcggtgtg tgcggacagc acctcgggcc tgtcccgcta
841 ccagctggtc ttcatgctgg gccagttcct gcatggcgtg ggtgccacac ccctctacac
901 gctgggcgtc acctacctgg atgagaacgt caagtccagc tgctcgcccg tctacattgc
961 catcttctac acagcggcca tcctgggccc agctgccggc tacctgattg gaggtgccct
1021 gctgaatatc tacacggaaa tgggccgacg gacggagctg accaccgaga gcccactgtg
1081 ggtcggcgcc tggtgggtcg gcttcctggg ctctggggcc gctgctttct tcaccgccgt
1141 tcccatcctt ggttaccctc ggcagctgcc aggctcccag cgctacgcgg tcatgagagc
1201 ggcggaaatg caccagttga aggacagcag ccgtggggag gcgagcaacc cggactttgg
1261 gaaaaccatc agagacctgc ctctctccat ctggctcctg ctgaagaacc ccacgttcat
1321 cctgctctgc ctggccgggg ccaccgaggc cactctcatc accggcatgt ccacgttcag
1381 ccccaagttc ttggagtccc agttcagcct gagtgcctca gaagctgcca ccttgtttgg
1441 gtacctggtg gtgccagcgg gtggtggcgg caccttcctg ggcggcttct ttgtgaacaa
1501 gctcaggctc cggggctccg cggtcatcaa gttctgcctg ttctgcaccg ttgtcagcct
1561 gctgggcatc ctcgtcttct cactgcactg ccccagtgtg cccatggcgg gcgtcacagc
1621 cagctacggc gggagcctcc tgcccgaagg ccacctgaac ctaacggctc cctgcaacgc
1681 tgcctgcagc tgccagccag aacactacag ccctgtgtgc ggctcggacg gcctcatgta
1741 cttctcactg tgccacgcag ggtgccctgc agccacggag acgaatgtgg acggccagaa
1801 ggtgtaccga gactgtagct gtatccctca gaatctttcc tctggttttg gccatgccac
1861 tgcagggaaa tgcacttcaa cttgtcagag aaagcccctc cttctggttt tcatattcgt
1921 tgtaattttc tttacattcc tcagcagcat tcctgcacta acggcaactc tacgatgtgt
1981 ccgtgaccct cagagatcct ttgccctggg aatccagtgg attgtagtta gaatactagg
2041 gggcatcccg gggcccatcg ccttcggctg ggtgatcgac aaggcctgtc tgctgtggca
2101 ggaccagtgt ggccagcagg gctcctgctt ggtgtaccag aattcggcca tgagccgcta
2161 catactcatc atggggctcc tgtacaaggt gctgggcgtc ctcttctttg ccatagcctg
2221 cttcttatac aagcccctgt cggagtcttc agatggcctg gaaacttgtc tgcccagcca
2281 gtcctcagcc cctgacagtg ccacagatag ccagctccag agcagcgtct gaccaccgcc
2341 cgcgcccacc cggccacggc gggcactcag catttcctga tgacagaaca gtgccgttgg
2401 gtgatgcaat cacacgggaa cttctatttg acctgcaacc ttctacttaa cctgtggttt
2461 aaagtcggct gtgacctcct gtccccagag ctgtacggcc ctgcagtggg tgggaggaac
2521 ttgcataaat atatatttat ggacacacag tttgcatcag aacgtgttta tagaatgtgt
2581 tttatacccg atcgtgtgtg gtgtgcgtga ggacaaactc cgcaggggct gtgaatccca
2641 ctgggagggc ggcgggcctg cagcccgagg aaggcttgtg tgtcctcagt taaaactgtg
2701 catatcgaaa tatattttgt tatttaagcc tgaaaaaaaa aaaaaaaaaa
//