LOCUS BC015626 1257 bp mRNA linear HUM 16-DEC-2006
DEFINITION Homo sapiens par-6 partitioning defective 6 homolog alpha (C.
elegans), mRNA (cDNA clone MGC:22974 IMAGE:4844008), complete cds.
ACCESSION BC015626
VERSION BC015626.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1257)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1257)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 20, 2003 this sequence version replaced BC015626.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 33 Row: o Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 8394416.
FEATURES Location/Qualifiers
source 1..1257
/db_xref="H-InvDB:HIT000037225"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:22974 IMAGE:4844008"
/tissue_type="Eye, normal, pigmented retinal epithelium"
/clone_lib="NIH_MGC_43"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1257
/gene="PARD6A"
/gene_synonym="PAR-6A"
/gene_synonym="PAR6"
/gene_synonym="PAR6alpha"
/gene_synonym="PAR6C"
/gene_synonym="TAX40"
/gene_synonym="TIP-40"
/db_xref="GeneID:50855"
/db_xref="HGNC:HGNC:15943"
/db_xref="MIM:607484"
CDS 72..1109
/gene="PARD6A"
/gene_synonym="PAR-6A"
/gene_synonym="PAR6"
/gene_synonym="PAR6alpha"
/gene_synonym="PAR6C"
/gene_synonym="TAX40"
/gene_synonym="TIP-40"
/codon_start=1
/product="par-6 partitioning defective 6 homolog alpha (C.
elegans)"
/protein_id="AAH15626.1"
/db_xref="GeneID:50855"
/db_xref="HGNC:HGNC:15943"
/db_xref="MIM:607484"
/translation="MARPQRTPARSPDSIVEVKSKFDAEFRRFALPRASVSGFQEFSR
LLRAVHQIPGLDVLLGYTDAHGDLLPLTNDDSLHRALASGPPPLRLLVQKREADSSGL
AFASNSLQRRKKGLLLRPVAPLRTRPPLLISLPQDFRQVSSVIDVDLLPETHRRVRLH
KHGSDRPLGFYIRDGMSVRVAPQGLERVPGIFISRLVRGGLAESTGLLAVSDEILEVN
GIEVAGKTLDQVTDMMVANSHNLIVTVKPANQRNNVVRGASGRLTGPPSAGPGPAEPD
SDDDSSDLVIENRQPPSSNGLSQGPPCWDLHPGCRHPGTRSSLPSLDDQEQASSGWGS
RIRGDGSGFSL"
BASE COUNT 232 a 404 c 387 g 234 t
ORIGIN
1 gccggccggg ctgtgcacct gcgcctcggc gggccgcctg gggcaccgtc cccggcccgc
61 ccggccccgc catggcccgg ccgcagagga ctccggcgcg cagtcccgat agcatcgtcg
121 aggtgaagag caaatttgac gccgagttcc gacgcttcgc gctgcctcgc gcttcggtga
181 gcggcttcca ggagttctcg cggttgctgc gggcggtgca ccagatcccg ggcctggacg
241 tgctacttgg ctatacggat gctcatggcg acctgctgcc cctcaccaac gacgacagcc
301 tgcaccgggc cctggccagc gggcccccgc cactgcgcct actggtgcag aagcgggaag
361 ctgactccag cggcctggct tttgcctcca actctctgca gcggcgcaag aaagggctct
421 tgctgcggcc agtggcaccc ctgcgcaccc ggccaccctt gctaatcagc ctgccccaag
481 atttccgcca ggtttcctca gtcatagacg tggacctact gcctgagacc caccgacggg
541 tgcggctgca caagcatggt tcagaccgcc ccctgggctt ctacatccga gatggcatga
601 gcgtgcgtgt ggctccccag ggcctggagc gggttccagg aatcttcatc tcccgcctgg
661 tacgtggggg tctggctgag agtacagggc tgctggcggt cagtgatgag atcctcgagg
721 tcaatggcat tgaagtagcc gggaagacct tggaccaagt gacggacatg atggttgcca
781 acagccataa cctcattgtc actgtcaagc ccgccaacca gcgcaataac gtggtgcgag
841 gggcatctgg gcgtttgaca ggtcctccct ctgcagggcc tgggcctgct gagcctgata
901 gtgacgatga cagcagtgac ctggtcattg agaaccgcca gcctcccagt tccaatgggc
961 tgtctcaggg gcccccgtgc tgggacctgc accctggctg ccgacatcct ggtacccgca
1021 gctctctgcc ctccctggat gaccaggagc aggccagttc tggctggggg agtcgcattc
1081 gaggagatgg tagtggcttc agcctctgac agtcaggatg aagccccatg ccactccaca
1141 ctgctgggac atggcaggga cttcacagtg ggggttttta gctggctcac agggctccct
1201 cagcctgggg aacattaaag gttttctaca aatacagtca aaaaaaaaaa aaaaaaa
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