LOCUS BC015581 2449 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens leucine rich repeat and fibronectin type III domain
containing 4, mRNA (cDNA clone MGC:23278 IMAGE:4637053), complete
cds.
ACCESSION BC015581
VERSION BC015581.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2449)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2449)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC015581.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP/Gazdar
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 33 Row: c Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..2449
/db_xref="H-InvDB:HIT000037200"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:23278 IMAGE:4637053"
/tissue_type="Lung, large cell carcinoma"
/clone_lib="NIH_MGC_18"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2449
/gene="LRFN4"
/gene_synonym="MGC3103"
/gene_synonym="SALM3"
/db_xref="GeneID:78999"
/db_xref="HGNC:HGNC:28456"
CDS 244..2151
/gene="LRFN4"
/gene_synonym="MGC3103"
/gene_synonym="SALM3"
/codon_start=1
/product="leucine rich repeat and fibronectin type III
domain containing 4"
/protein_id="AAH15581.2"
/db_xref="GeneID:78999"
/db_xref="HGNC:HGNC:28456"
/translation="MAPPLLLLLLASGAAACPLPCVCQNLSESLSTLCAHRGLLFVPP
NVDRRTVELRLADNFIQALGPPDFRNMTGLVDLTLSRNAITRIGARAFGDLESLRSLH
LDGNRLVELGTGSLRGPVNLQHLILSGNQLGRIAPGAFDDFLESLEDLDLSYNNLRQV
PWAGIGAMPALHTLNLDHNLIDALPPGAFAQLGQLSRLDLTSNRLATLAPDPLFSRGR
DAEASPAPLVLSFSGNPLHCNCELLWLRRLARPDDLETCASPPGLAGRYFWAVPEGEF
SCEPPLIARHTQRLWVLEGQRATLRCRALGDPAPTMHWVGPDDRLVGNSSRARAFPNG
TLEIGVTGAGDAGGYTCIATNPAGEATARVELRVLALPHGGNSSAEGGRPGPSDIAAS
ARTAAEGEGTLESEPAVQVTEVTATSGLVSWGPGRPADPVWMFQIQYNSSEDETLIYR
IVPASSHHFLLKHLVPGADYDLCLLALSPAAGPSDLTATRLLGCAHFSTLPASPLCHA
LQAHVLGGTLTVAVGGVLVAALLVFTVALLVRGRGAGNGRLPLKLSHVQSQTNGGPSP
TPKAHPPRSPPPRPQRSCSLDLGDAGCYGYARRLGGAWARRSHSVHGGLLGAGCRGVG
GSAERLEESVV"
BASE COUNT 356 a 883 c 778 g 432 t
ORIGIN
1 cttgtcccca gcgcctggac tcccccttaa ctgcttggga aatgtgacct ttgctctggg
61 gggcctggcc ctgcaggccc caaccttccc tcatctctgg cggccctctt gggcctctga
121 cccagcccct ccccgggcca ggctcacaga agctggcttc tgggactgtc ctgggcccaa
181 gtgggcacct gcgccagccc cacctgtgcc tgggctgtgg ccccttccta cagggcgctc
241 accatggccc cgccgctcct gctgctgctg ctggccagtg gagcggccgc ctgcccgctg
301 ccctgcgtct gccagaacct gtccgagtcg ctcagcaccc tctgtgccca ccgaggcctg
361 ctgtttgtgc cgcccaacgt ggaccggcgc acagtggagc tgcggctggc tgacaacttc
421 atccaggccc tggggccccc tgacttccgc aacatgacgg gactggtgga cctgacactg
481 tctcgcaatg ccatcacccg cattggggcc cgcgcctttg gggacctcga gagcctgcgt
541 tccctccacc ttgacggcaa caggctggtg gagctgggca ccgggagcct ccggggcccc
601 gtcaatctgc agcacctcat cctcagcggc aaccagctgg gccgcatcgc gccgggagcc
661 ttcgacgact tcctagagag cctggaggac ctggacctgt cctacaacaa cctccggcag
721 gtgccctggg ccggcatcgg cgccatgcct gccctgcaca ccctcaacct ggaccataac
781 cttattgacg cactgccccc aggcgccttc gcccagctcg gtcagctctc ccgcctggac
841 ctcacctcca accgcctggc cacgctggct ccggacccgc ttttctctcg tgggcgtgat
901 gcagaggcct ctcccgcccc cctggtgctg agctttagcg ggaaccccct gcactgcaac
961 tgtgagctgc tgtggctgcg gcggctggcg cggccggacg acctggaaac gtgcgcctcc
1021 ccgcccggcc tggccggccg ctacttctgg gcagtgcccg agggcgagtt ctcctgtgag
1081 ccgcccctca ttgcccgcca cacgcagcgc ctctgggtgc tggaaggcca gcgggccacg
1141 ctgcggtgcc gggccctggg tgaccccgcg cctaccatgc actgggtcgg tcctgacgac
1201 cggttggttg gcaactcctc ccgagcccgg gctttcccca acgggacctt agagattggg
1261 gtgaccggcg ctggggacgc tgggggctac acctgcatcg ccaccaaccc tgctggtgag
1321 gccacagccc gagtagaact gcgggtgctg gccttgcccc atggtgggaa cagcagtgcc
1381 gaggggggcc gccccgggcc ctcggacatc gccgcctccg ctcgcactgc tgccgagggt
1441 gaggggacgc tggagtctga gccagccgtg caggtgacgg aggtgaccgc cacctcaggg
1501 ctggtgagct ggggtcccgg gcggccagcc gacccagtgt ggatgttcca aatccagtac
1561 aacagcagcg aagatgagac cctcatctac cggattgtcc cagcctccag ccaccacttc
1621 ctgctgaagc acctcgtccc cggcgctgac tatgacctct gcctgctggc cttgtcaccg
1681 gccgctgggc cctctgacct cacggccacc aggctgctgg gctgtgccca tttctccacg
1741 ctgccggcct cgcccctgtg ccacgccctg caggcccacg tgctgggcgg gaccctgacc
1801 gtggccgtgg ggggtgtgct ggtggctgcc ttactggtct tcactgtggc cttgctggtt
1861 cggggccggg gggccggaaa tggccgcctc cccctcaagc tcagccacgt ccagtcccag
1921 accaatggag gccccagccc cacacccaag gcccacccgc cgcggagccc cccgccccgg
1981 ccgcagcgca gctgctctct ggacctggga gatgccgggt gctacggtta tgccaggcgc
2041 ctgggaggag cttgggcccg acggagccac tctgtgcatg gggggctgct cggggcaggg
2101 tgccgggggg taggaggcag cgccgagcgg ctggaagaga gtgtggtgtg atggacgggc
2161 agcttcctgt gtgctccaag ggatgagcct cgtggggcag agggcccggg gccgccgcct
2221 ggcctgggag tccctccctg gtttttattc tcagtacctc aggctcccct gtgtacttgg
2281 aggggcaggg agccctttcc tcggttctgg cctccagacc agggtaaggg caggcccctc
2341 caacaggtgc tcacagccac cgaggcaggg gctgcagcca cccactggga gtcttgtttt
2401 tatttataat aaaattgttg gggacacctc aaaaaaaaaa aaaaaaaaa
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