LOCUS BC015575 1334 bp mRNA linear HUM 11-DEC-2003
DEFINITION Homo sapiens synaptotagmin binding, cytoplasmic RNA interacting
protein, mRNA (cDNA clone IMAGE:3946996), partial cds.
ACCESSION BC015575
VERSION BC015575.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1334)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1334)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (04-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC015575.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 33 Row: a Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 23397426.
FEATURES Location/Qualifiers
source 1..1334
/db_xref="H-InvDB:HIT000088739"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3946996"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..>1334
/gene="SYNCRIP"
/gene_synonym="dJ3J17.2"
/gene_synonym="GRY-RBP"
/gene_synonym="NSAP1"
/gene_synonym="pp68"
/db_xref="GeneID:10492"
CDS 83..>1334
/gene="SYNCRIP"
/gene_synonym="dJ3J17.2"
/gene_synonym="GRY-RBP"
/gene_synonym="NSAP1"
/gene_synonym="pp68"
/codon_start=1
/product="SYNCRIP protein"
/protein_id="AAH15575.1"
/db_xref="GeneID:10492"
/translation="MATEHVNGNGTEEPMDTTSAVIHSENFQTLLDAGLPQKVAEKLD
EIYVAGLVAHSDLDERAIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTY
RQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSV
GTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE
AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILY
HQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVM
AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMN
GKDLEGENIEIVFAKPPDQKKKKKK"
misc_feature 572..790
/gene="SYNCRIP"
/gene_synonym="dJ3J17.2"
/gene_synonym="GRY-RBP"
/gene_synonym="NSAP1"
/gene_synonym="pp68"
/note="RRM; Region: RNA recognition motif"
/db_xref="CDD:smart00360"
misc_feature 812..1000
/gene="SYNCRIP"
/gene_synonym="dJ3J17.2"
/gene_synonym="GRY-RBP"
/gene_synonym="NSAP1"
/gene_synonym="pp68"
/note="RRM; Region: RNA recognition motif"
/db_xref="CDD:smart00360"
misc_feature 1097..1291
/gene="SYNCRIP"
/gene_synonym="dJ3J17.2"
/gene_synonym="GRY-RBP"
/gene_synonym="NSAP1"
/gene_synonym="pp68"
/note="RRM; Region: RNA recognition motif"
/db_xref="CDD:smart00360"
BASE COUNT 441 a 230 c 318 g 345 t
ORIGIN
1 gcagcgagca cgcgtttccc gcaacccgat accatcggac aggatttctc cgcctcagcc
61 caacggggag atctctggaa acatggctac agaacatgtt aatggaaatg gtactgaaga
121 gcccatggat actacttctg cagttatcca ttcagaaaat tttcagacat tgcttgatgc
181 tggtttacca cagaaagttg ctgaaaaact agatgaaatt tacgttgcag ggctagttgc
241 acatagtgat ttagatgaaa gagctattga agctttaaaa gaattcaatg aagacggtgc
301 attggcagtt cttcaacagt ttaaagacag tgatctctct catgttcaga acaaaagtgc
361 ctttttatgt ggagtcatga agacttacag gcagagagaa aaacaaggga ccaaagtagc
421 agattctagt aaaggaccag atgaggcaaa aattaaggca ctcttggaaa gaacaggcta
481 cacacttgat gtgaccactg gacagaggaa gtatggagga ccacctccag attccgttta
541 ttcaggtcag cagccttctg ttggcactga gatatttgtg ggaaagatcc caagagatct
601 atttgaggat gaacttgttc cattatttga gaaagctgga cctatatggg atcttcgtct
661 aatgatggat ccactcactg gtctcaatag aggttatgcg tttgtcactt tttgtacaaa
721 agaagcagct caggaggctg ttaaactgta taataatcat gaaattcgtt ctggaaaaca
781 tattggtgtc tgcatctcag ttgccaacaa taggcttttt gtgggctcta ttcctaagag
841 taaaaccaag gaacagattc ttgaagaatt tagcaaagta acagagggtc ttacagacgt
901 cattttatac caccaaccgg atgacaagaa aaaaaacaga ggcttttgct ttcttgaata
961 tgaagatcac aaaacagctg cccaggcaag gcgtaggtta atgagtggta aagtcaaggt
1021 ctgggggaat gttggaactg ttgaatgggc tgatcctata gaagatcctg atcctgaggt
1081 tatggcaaag gtaaaagtgc tgtttgtacg caaccttgcc aatactgtaa cagaagagat
1141 tttagaaaag gcatttagtc agtttgggaa actggaacga gtgaagaagt taaaagatta
1201 tgcgttcatt cattttgatg agcgagatgg tgctgtcaag gctatggaag aaatgaatgg
1261 caaagacttg gagggagaaa atattgaaat tgtttttgcc aagccaccag atcagaaaaa
1321 aaaaaaaaaa aaaa
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