LOCUS BC015565 2340 bp mRNA linear HUM 06-JAN-2006
DEFINITION Homo sapiens homeobox B9, mRNA (cDNA clone MGC:12925
IMAGE:4139164), complete cds.
ACCESSION BC015565
VERSION BC015565.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2340)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2340)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 17 Row: k Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 24797138.
FEATURES Location/Qualifiers
source 1..2340
/db_xref="H-InvDB:HIT000037187"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12925 IMAGE:4139164"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2340
/gene="HOXB9"
/gene_synonym="HOX-2.5"
/db_xref="GeneID:3219"
/db_xref="HGNC:HGNC:5120"
/db_xref="IMGT/GENE-DB:5120"
/db_xref="MIM:142964"
CDS 96..848
/gene="HOXB9"
/gene_synonym="HOX-2.5"
/codon_start=1
/product="HOXB9 protein"
/protein_id="AAH15565.1"
/db_xref="GeneID:3219"
/db_xref="HGNC:HGNC:5120"
/db_xref="IMGT/GENE-DB:5120"
/db_xref="MIM:142964"
/translation="MSISGTLSSYYVDSIISHESEDAPPAKFPSGQYASSRQPGHAEH
LEFPSCSFQPKAPVFGASWAPLSPHASGSLPSVYHPYIQPQGVPPAESRYLRTWLEPA
PRGEAAPGQGQAAVKAEPLLGAPGELLKQGTPEYSLETSAGREAVLSNQRPGYGDNKI
CEGSEDKERPDQTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEV
ARLLNLSERQVKIWFQNRRMKMKKMNKEQGKE"
BASE COUNT 555 a 674 c 614 g 497 t
ORIGIN
1 ggcacgaggc cggtccgggt gccacctctc cctgcttggg cgccgccgcg cgagcgcttc
61 ccttccccct gcaagcgccc ggataatgtc tgagaatgtc catttctggg acgcttagca
121 gctattatgt cgactcgatc ataagtcacg agagtgagga cgcgcctcca gccaagtttc
181 cttctggcca gtacgcgagc tcgcggcagc cgggccacgc ggagcacctg gagttcccct
241 cgtgcagctt ccagcccaaa gcgccggtgt tcggcgcctc ctgggcgccg ctgagcccgc
301 acgcgtccgg gagcctgccg tccgtctacc acccttacat ccagccccag ggcgtcccgc
361 cggccgagag caggtacctc cgcacctggc tggagccggc gccgcgcggc gaagcggccc
421 cggggcaggg ccaggcggcg gtgaaggcgg agccgctgct gggcgcgcct ggggagctgc
481 tcaaacaggg cacgcccgag tacagtttgg aaacttcggc gggcagggag gccgtgctgt
541 ctaatcaaag acccggctac ggggacaata aaatttgcga aggaagcgag gacaaagaga
601 ggccggatca aaccaacccc tccgccaact ggctgcacgc tcgctcttcc cggaaaaagc
661 gctgtcccta caccaaatac cagacgctgg agctagagaa ggagtttctg ttcaatatgt
721 acctcaccag ggaccgtagg cacgaagtgg ccagactcct caatctgagt gagagacaag
781 tcaaaatctg gtttcagaac cggcggatga aaatgaagaa aatgaataag gagcagggca
841 aagagtaaag attaaagatt acccccagtc ctccctagct cttccccatc tcactcttag
901 ttatgtgacg actgcaaagc cagtgctgtc tgggatgtat tcaagtgaat ggggaaggga
961 gtctctcttc caagtccttt atctgcacct agaacctccc tcctttcctt tgcccttacc
1021 tgtctctctc ttctctctag gtgtcagccc tcagactgtc aggcaagccc gggttctacc
1081 cctaatgcaa atacccacca gggagatgtc tagaggcaga ctcctgagtg aggtgttgca
1141 gcccaaaggc tgcagcattg ccataccatt cccatggagt tgccaactat tctcaggcca
1201 agggccatgg ggaagatgga gcaaacctag cccccaagcc ggtgggctag aaagtacaag
1261 aaaaggcagc acgtggtttt atgaaggtat cttaggtgga gctactcccc acctcccacc
1321 aacatataca ttttgttgca ggaaatgttt aattccgcat gatgtttccc tctccttcca
1381 acaaaagaag gtcaaactgt gggtcgtaga gccttgacaa tgttgtcctc ctgttcatct
1441 gtgcaccact tgacagactg tagcttctct tgctctcgac cggccctgca ttcttccgca
1501 ccctccctag ctctgaaatc aactctcttc ggtcgtatcc accttgcacc cgcaagtcaa
1561 gccgcccctt gtagaaaaat ccctccacct tccgttcccc gctaggtcaa ccccactgta
1621 gacaggaaag ccaggccagg agagtccgaa tgagaattta ttgtgaatcg attcccaagc
1681 tcccttccgg gacaagtggt ctgggacagg gaggagcaac ggccccagcg cgcaacgctc
1741 tgcgcgttcc tccgaatccc gtcggcttct cgacccacgc agagaagccc cgggcttggc
1801 ggctctagcc ccagcgccaa aggagacccg ccccagggcc gggcttggcc tcctgcttca
1861 tgggcctgga tgcagatctg cgtggctggt gcgtgcgcgc gcttctggga aacagtcccg
1921 cgtgcaaagg aaaggggcaa aatggcacct aagcatcaga tggaagctta ctctctgctt
1981 ccgttcctcc ccctgctccc ctacttctca gtccccttca atttgtagac tcttgctcct
2041 gcttctcctg atcctgcaag gggacattcc agtagaagtt ttttgctttg tcggtggctg
2101 tcgtgaaatt gtgcttgtgt ttcgtgattt ctttgggggt gattgtctcg cttgttttca
2161 gttgtcgatt atatgggagg gttctgggtg ggagtgggga gggcgagggg cctagagctc
2221 taattgtttg ttttggaaga aaaaaagaaa aagaacaaaa aatatatatc actctagaaa
2281 ataaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
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