LOCUS BC015505 3742 bp mRNA linear HUM 08-SEP-2006
DEFINITION Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, mRNA (cDNA
clone MGC:9119 IMAGE:3905607), complete cds.
ACCESSION BC015505
VERSION BC015505.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3742)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3742)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 14 Row: p Column: 23.
FEATURES Location/Qualifiers
source 1..3742
/db_xref="H-InvDB:HIT000037148"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9119 IMAGE:3905607"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3742
/gene="DDX42"
/gene_synonym="RHELP"
/gene_synonym="RNAHP"
/gene_synonym="SF3b125"
/db_xref="GeneID:11325"
/db_xref="HGNC:HGNC:18676"
CDS 343..2802
/gene="DDX42"
/gene_synonym="RHELP"
/gene_synonym="RNAHP"
/gene_synonym="SF3b125"
/codon_start=1
/product="DDX42 protein"
/protein_id="AAH15505.1"
/db_xref="GeneID:11325"
/db_xref="HGNC:HGNC:18676"
/translation="MAEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRY
MAENPTAGVVQEEEEDNLEYDSDGNPIAPTKKIIDPLPPIDHSEIDYPPFEKNFYNEH
EEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPI
QCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRE
LCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKA
TNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDIL
IDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANA
EELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKT
VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKE
LLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGYRERPGLGSENMDRGNNNVMSNYEAY
KPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQKAGSSAAGASGWTSAGSLNSVPTN
SAQQGHNSPDSPVTSAAKGIPGFGNTGNISGAPVTYPSAGAQGVNNTASGNNSREGTG
GSNGKRERYTENRGSSRHSHGETGNRHSDSPRHGDGGRHGDGYRHPESSSRHTDGHRH
GENRHGGSAGRHGENRGANDGRNGESRKEAFNRESKMEPKMEPKVDSSKMDKVDSKTD
KTADGFAVPEPPKRKKSRWDS"
BASE COUNT 1093 a 754 c 982 g 913 t
ORIGIN
1 ggtggtcctg gcactaagcg aggatttggc tttggaggtt ttgccatcag tgctgggaaa
61 aaggaggaac ccaaactccc acagcagtcc cacagtgcct ttggggcaac cagctcttct
121 tctggatttg gaaagtcagc tccaccacag cttccttctt tctacaaaat tggatctaag
181 cgggccaact ttgatgaaga aaatgcctat tttgaagatg aggaagaaga ttctagcaac
241 gttgatttac cttacattcc tgctgaaaac tcaccaactc gccagcaatt ccattccaag
301 ccagtagatt ctgacagcga tgatgatccc ttggaggcat tcatggctga agtggaggat
361 caggcagcta gagacatgaa gaggcttgaa gaaaaggaca aggaaagaaa aaacgtaaag
421 ggtattcgag atgacattga agaggaagat gaccaagaag cttattttcg atacatggca
481 gaaaacccaa ctgctggtgt ggttcaggag gaagaggaag acaatctaga atatgatagt
541 gacggaaatc caattgcacc taccaaaaaa atcattgatc ctcttccccc cattgatcat
601 tcagagattg actatccacc atttgaaaaa aacttttaca atgagcatga agagataacc
661 aacctcactc cacagcagtt aatagatctc cggcataagc tcaatcttcg ggtctctggt
721 gctgcacctc ctagaccagg aagtagcttt gctcattttg ggtttgacga acaacttatg
781 caccagattc ggaaatctga atacacacag cccactccaa tacagtgcca gggtgtgcct
841 gtggcattaa gtggtagaga catgattggt attgccaaaa caggtagtgg gaaaactgca
901 gccttcattt ggcccatgtt gattcatata atggaccaga aggagttgga accaggtgat
961 ggaccaattg cagtgattgt gtgtcctacc agggagcttt gccagcagat ccatgcagaa
1021 tgtaagcggt ttggaaaagc atataatctt cgatcagtgg ccgtatatgg aggagggagt
1081 atgtgggagc aggccaaggc ccttcaggag ggggcagaga ttgttgtgtg taccccaggt
1141 cgactgatag atcatgtgaa aaagaaagct accaatcttc aaagagtctc ttaccttgtg
1201 tttgatgaag cagatcgaat gtttgacatg ggatttgagt accaagttcg atccatagca
1261 agtcatgttc gtcctgacag gcagactctc ttatttagtg caacttttcg gaagaagatt
1321 gaaaagttgg ccagagacat cctgatcgac cctattcgag tggtgcaggg agatattgga
1381 gaggcaaatg aagatgtgac acagattgtg gagattctcc attctggacc tagtaaatgg
1441 aactggctta cccggcgtct ggtagaattt acctcttcag ggagtgtcct cctctttgtt
1501 actaaaaaag ccaatgctga agagctagcg aataacctta aacaggaggg tcataatctt
1561 gggctgctcc atggggatat ggatcagagt gagagaaaca aggtcatttc agactttaag
1621 aaaaaggaca tcccagtcct ggtggccaca gatgttgcag cccgtggtct ggacattcct
1681 tcaattaaga ctgtcattaa ctatgatgtg gcacgagaca ttgataccca cacgcatagg
1741 attggccgca caggaagagc gggtgagaaa ggtgtggcct ataccctact cactcccaag
1801 gacagcaatt ttgctggtga cctggtccgg aacttggaag gagccaatca acacgtttct
1861 aaggaactcc tagatctggc aatgcagaat gcctggtttc ggaaatctcg attcaaagga
1921 gggaaaggaa aaaagctgaa cattggtgga ggaggcctag gctacaggga gcggcctggc
1981 ctgggctctg agaacatgga tcgaggaaat aacaatgtaa tgagcaatta tgaggcctac
2041 aagccttcca caggagctat gggagatcga ctaacggcaa tgaaagcagc tttccagtca
2101 cagtacaaga gtcactttgt tgcagccagt ttaagtaatc agaaggctgg aagttctgct
2161 gctggggcaa gtgggtggac tagtgcaggg agcttgaatt ctgttccaac taactcagca
2221 caacagggcc ataacagtcc tgacagcccc gtcaccagtg ccgccaaggg catcccaggc
2281 tttggcaata ctggcaacat cagtggtgcc cctgtgacct acccgtctgc cggagcccaa
2341 ggagtcaaca acacagcttc agggaataac agccgagaag ggactggggg cagcaacggg
2401 aaaagagaga gatatactga gaaccggggc agcagccgtc acagtcacgg agagactggc
2461 aatcggcata gcgatagtcc acgtcacgga gatggtggtc gccatggaga tggataccgc
2521 catccagaaa gcagcagccg tcatactgat ggccatcggc acggggagaa cagacatgga
2581 ggaagcgcag gccggcatgg ggagaaccgg ggtgcaaatg atggtcggaa tggggaaagc
2641 aggaaagaag cttttaatcg tgagagcaag atggagccca agatggaacc caaagtggac
2701 agcagcaaga tggacaaggt ggacagcaag acagataaga cagctgacgg ctttgctgtc
2761 ccagagccgc ctaaacgcaa gaaaagtcga tgggacagtt agaggggatg tgctaaagcg
2821 tgaaatcagt tgtccttaat ttttagaaag attttggtaa ctaggtgtct cagggctggg
2881 ttggggtcca aagtgtaagg accccctgcc cttagtggag agctggagct tggagacatt
2941 accccttcat cagaaggaat tttcggatgt tttcttggga agctgttttg gtccttggaa
3001 gcagtgagag ctgggaagct tcttttggct ctaggtgagt tgtcatgtgg gtaagttgag
3061 gttatcttgg gataaagggt cttctagggc acaaaactca ctctaggttt atattgtatg
3121 tagcttatat tttttactaa ggtgtcacct tataagcatc tataaattga cttctttttc
3181 ttagttgtat ggccaggcag tccccatttt aggagttggc ttctgcaaat tcaatccatt
3241 gagctaactg ttggggagca atttggtagt tgtagacatt tgcagggaag ggagatgtct
3301 gattctaaat gggagttgat gctcaggtcc ccagccaggt ttgcatccag ccctgagaca
3361 tgtaggaaac acctttcaga cccaggctct gaagattccc agaagccaca aggattgaag
3421 ggaaaaggtg atcctggtaa ctgttccagg attgctccag gtttgagatg gtattgctaa
3481 atttaaaatt aaacaagaaa cccaacaaca gcttttaaag tgtcttctat ctcattgtat
3541 tttttttaac ttgccccaat gatagaaaag tcttttgctg aaatgatttt gatgattttt
3601 gtttatcgtt tataaaaagg aaaagaaata tacaaacttt gacttttgtg actttgtgaa
3661 ggtttcttta agatgtgcat tcctttctgc ttgctctcta gtaaatgttt tactaccggg
3721 aaaaaaaaaa aaaaaaaaaa aa
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