LOCUS BC015200 1633 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens sorting and assembly machinery component 50 homolog
(S. cerevisiae), mRNA (cDNA clone MGC:14783 IMAGE:4333051),
complete cds.
ACCESSION BC015200
VERSION BC015200.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1633)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1633)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 21 Row: b Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..1633
/db_xref="H-InvDB:HIT000037048"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:14783 IMAGE:4333051"
/tissue_type="Skin, melanotic melanoma, high MDR."
/clone_lib="NIH_MGC_62"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1633
/gene="SAMM50"
/gene_synonym="CGI-51"
/gene_synonym="OMP85"
/gene_synonym="SAM50"
/gene_synonym="TOB55"
/gene_synonym="TRG-3"
/gene_synonym="YNL026W"
/db_xref="GeneID:25813"
/db_xref="HGNC:HGNC:24276"
CDS 48..1457
/gene="SAMM50"
/gene_synonym="CGI-51"
/gene_synonym="OMP85"
/gene_synonym="SAM50"
/gene_synonym="TOB55"
/gene_synonym="TRG-3"
/gene_synonym="YNL026W"
/codon_start=1
/product="sorting and assembly machinery component 50
homolog (S. cerevisiae)"
/protein_id="AAH15200.1"
/db_xref="GeneID:25813"
/db_xref="HGNC:HGNC:24276"
/translation="MGTVHARSLEPLPSSGPDFGGLGEEAEFVEVEPEAKQEILENKD
VVVQHVHFDGLGRTKDDIIICEIGDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVL
IDTCQGDDALPNGLDVTFEVTELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVT
FQFSYGTKETSYGLSFFKPRPGNFERNFSVNLYKVTGQFPWSSLRETDRGMSAEYSFP
IWKTSHTVKWEGVWRELGCLSRTASFAVRKESGHSLKSSLSHAMVIDSRNSSILPRRG
ALLKVNQELAGYTGGDVSFIKEDFELQLNKQLIFDSVFSASFWGGMLVPIGDKPSSIA
DRFYLGGPTSVRGFSMHSIGPQSEGDYLGGEAYWAGGLHLYTPLPFRPGQGGFGELFR
THFFLNAGNLCNLNYGEGPKAHIRKLAECIRWSYGAGIVLRLGNIARLELNYCVPMGV
QTGDRICDGVQFGAGIRFL"
BASE COUNT 447 a 363 c 430 g 393 t
ORIGIN
1 ctgtcccgcc cgggcagctc tgcgaggcag cggctggaga gggaaccatg gggactgtgc
61 acgcccggag tttggagcct cttccatcaa gtggacctga ttttggagga ttaggagaag
121 aagctgaatt tgttgaagtt gagcctgaag ctaaacagga aattcttgaa aacaaagatg
181 tggttgttca acatgttcat tttgatggac ttggaaggac taaagatgat atcatcattt
241 gtgaaattgg agatgttttc aaggccaaaa acctaattga ggtaatgcgg aaatctcatg
301 aagcccgtga aaaattgctc cgtcttggaa tttttagaca agtggatgtt ttgattgaca
361 catgtcaagg tgatgacgca cttccaaatg ggttagacgt tacctttgaa gtaactgaat
421 tgaggagatt aacgggcagt tataacacca tggttgggaa caatgaaggc agtatggtac
481 ttggcctcaa gcttcctaat cttcttggtc gtgcagaaaa ggtgaccttt cagttttcct
541 atggaacaaa agaaacttcg tatggcctgt ccttcttcaa accacggccc ggaaacttcg
601 aaagaaattt ctctgtaaac ttatataaag ttactggaca gttcccttgg agctcactgc
661 gggagacgga cagaggaatg tcagctgagt acagttttcc catatggaag accagccaca
721 ctgtcaagtg ggaaggcgta tggcgagaac tgggctgcct ctcaaggacg gcgtcatttg
781 ctgttcgaaa agaaagcgga cattcactga aatcatctct ttcgcacgcc atggtcatcg
841 attctcggaa ttcttccatc ttaccaagga gaggtgcttt gctgaaagtt aaccaggaac
901 tggcaggcta cactggcggg gatgtgagct tcatcaaaga agattttgaa cttcagttga
961 acaagcaact catatttgat tcagtttttt cagcgtcttt ctggggcgga atgttggtac
1021 ccattggtga taagccgtca agcattgctg ataggtttta cctcggggga cccacaagcg
1081 tccgcggatt cagcatgcac agcatcgggc cacagagcga aggagactac ctaggtggag
1141 aagcgtactg ggccggcggc ctgcacctct acaccccatt acctttccgg ccaggccagg
1201 gtggctttgg agaacttttc cgaacacact tctttctcaa cgcaggaaac ctctgcaacc
1261 tcaactatgg ggagggcccc aaagctcata ttcgtaagct ggctgagtgc atccgctggt
1321 cgtacggggc cgggattgtc ctcaggcttg gcaacatcgc tcggttggaa cttaattact
1381 gcgtccccat gggagtacag acaggtgaca ggatatgtga tggcgtccag tttggagctg
1441 ggataaggtt cctgtagccg acacccctac aggagaagct ctgggactgg ggcagcagca
1501 aggcgcccat gccacacacc gtctctcgag gaaacgcggt tcagcgattc tttgactgcg
1561 gaccctgtgg gaaaccccgt caataaatgt taaagacaca cacaaaaaaa aaaaaaaaaa
1621 aaaaaaaaaa aaa
//