LOCUS BC015022 2208 bp mRNA linear HUM 19-MAR-2007
DEFINITION Homo sapiens phosphatidylinositol glycan anchor biosynthesis, class
T, mRNA (cDNA clone MGC:8909 IMAGE:3921680), complete cds.
ACCESSION BC015022
VERSION BC015022.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2208)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2208)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 15 Row: n Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 23397652.
FEATURES Location/Qualifiers
source 1..2208
/db_xref="H-InvDB:HIT000036966"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:8909 IMAGE:3921680"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2208
/gene="PIGT"
/gene_synonym="CGI-06"
/gene_synonym="NDAP"
/db_xref="GeneID:51604"
/db_xref="HGNC:HGNC:14938"
/db_xref="MIM:610272"
CDS 20..1756
/gene="PIGT"
/gene_synonym="CGI-06"
/gene_synonym="NDAP"
/codon_start=1
/product="phosphatidylinositol glycan anchor biosynthesis,
class T"
/protein_id="AAH15022.3"
/db_xref="GeneID:51604"
/db_xref="HGNC:HGNC:14938"
/db_xref="MIM:610272"
/translation="MAAAMPLALLVLLLLGPGGWCLAEPPRDSLREELVITPLPSGDV
AATFQFRTRWDSELQREGVSHYRLFPKALGQLISKYSLRELHLSFTQGFWRTRYWGPP
FLQAPSGAELWVWFQDTVTDVDKSWKELSNVLSGIFCASLNFIDSTNTVTPTASFKPL
GLANDTDHYFLRYAVLPREVVCTENLTPWKKLLPCSSKAGLSVLLKADRLFHTSYHSQ
AVHIRPVCRNARCTSISWELRQTLSVVFDAFITGQGKKDWSLFRMFSRTLTEPCPLAS
ESRVYVDITTYNQDNETLEVHPPPTTTYQDVILGTRKTYAIYDLLDTAMINNSRNLNI
QLKWKRPPENEAPPVPFLHAQRYVSGYGLQKGELSTLLYNTHPYRAFPVLLLDTVPWY
LRLYVHTLTITSKGKENKPSYIHYQPAQDRLQPHLLEMLIQLPANSVTKVSIQFERAL
LKWTEYTPDPNHGFYVSPSVLSALVPSMVAAKPVDWEESPLFNSLFPVSDGSNYFVRL
YTEPLLVNLPTPDFSMPYNVICLTCTVVAVCYGSFYNLLTRTFHIEEPRTGGLAKRLA
NLIRRARGVPPL"
BASE COUNT 491 a 685 c 558 g 474 t
ORIGIN
1 ggcggaagta gccgcaggca tggcggcggc tatgccgctt gctctgctcg tcctgttgct
61 cctggggccc ggcggctggt gccttgcaga acccccacgc gacagcctgc gggaggaact
121 tgtcatcacc ccgctgcctt ccggggacgt agccgccaca ttccagttcc gcacgcgctg
181 ggattcggag cttcagcggg aaggagtgtc ccattacagg ctctttccca aagccctggg
241 gcagctgatc tccaagtatt ctctacggga gctgcacctg tcattcacac aaggcttttg
301 gaggacccga tactgggggc cacccttcct gcaggcccca tcaggtgcag agctgtgggt
361 ctggttccaa gacactgtca ctgatgtgga taaatcttgg aaggagctca gtaatgtcct
421 ctcagggatc ttctgcgcct ctctcaactt catcgactcc accaacacag tcactcccac
481 tgcctccttc aaacccctgg gtctggccaa tgacactgac cactactttc tgcgctatgc
541 tgtgctgccg cgggaggtgg tctgcaccga aaacctcacc ccctggaaga agctcttgcc
601 ctgtagttcc aaggcaggcc tctctgtgct gctgaaggca gatcgcttgt tccacaccag
661 ctaccactcc caggcagtgc atatccgccc tgtttgcaga aatgcacgct gtactagcat
721 ctcctgggag ctgaggcaga ccctgtcagt tgtatttgat gccttcatca cggggcaggg
781 aaagaaagac tggtccctct tccggatgtt ctcccgaacc ctcacggagc cctgccccct
841 ggcttcagag agccgagtct atgtggacat caccacctac aaccaggaca acgagacatt
901 agaggtgcac ccacccccga ccactacata tcaggacgtc atcctaggca ctcggaagac
961 ctatgccatc tatgacttgc ttgacaccgc catgatcaac aactctcgaa acctcaacat
1021 ccagctcaag tggaagagac ccccagagaa tgaggccccc ccagtgccct tcctgcatgc
1081 ccagcggtac gtgagtggct atgggctgca gaagggggag ctgagcacac tgctgtacaa
1141 cacccaccca taccgggcct tcccggtgct gctgctggac accgtaccct ggtatctgcg
1201 gctgtatgtg cacaccctca ccatcacctc caagggcaag gagaacaaac caagttacat
1261 ccactaccag cctgcccagg accggctgca accccacctc ctggagatgc tgattcagct
1321 gccggccaac tcagtcacca aggtttccat ccagtttgag cgggcgctgc tgaagtggac
1381 cgagtacaca ccagatccta accatggctt ctatgtcagc ccatctgtcc tcagcgccct
1441 tgtgcccagc atggtagcag ccaagccagt ggactgggaa gagagtcccc tcttcaacag
1501 cctgttccca gtctctgatg gctctaacta ctttgtgcgg ctctacacgg agccgctgct
1561 ggtgaacctg ccgacaccgg acttcagcat gccctacaac gtgatctgcc tcacgtgcac
1621 tgtggtggcc gtgtgctacg gctccttcta caatctcctc acccgaacct tccacatcga
1681 ggagccccgc acaggtggcc tggccaagcg gctggccaac cttatccggc gcgcccgagg
1741 tgtcccccca ctctgattct tgccctttcc agcagctgca gctgccgttt ctctctgggg
1801 aggggagccc aagggctgtt tctgccactt gctctcctca gagttggctt ttgaaccaaa
1861 gtgccctgga ccaggtcagg gcctacagct gtgttgtcca gtacaggagc cacgagccaa
1921 atgtggcatt tgaatttgaa ttaacttaga aattcatttc ctcacctgta gtggccacct
1981 ctatattgag gtgctcaata agcaaaagtg gtcggtggct gctgtattgg acagcacaga
2041 aaaagatttc catcaccaca gaaaggtcgg ctggcagcac tggccaaggt gatggggtgt
2101 gctacacagt gtatgtcact gtgtagtgga tggagtttac tgtttgtgga ataaaaacgg
2161 ctgtttccgt gaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaa
//