LOCUS BC014967 1578 bp mRNA linear HUM 04-OCT-2003
DEFINITION Homo sapiens chromobox homolog 4 (Pc class homolog, Drosophila),
mRNA (cDNA clone MGC:23084 IMAGE:4856728), complete cds.
ACCESSION BC014967
VERSION BC014967.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1578)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1578)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield,
Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin,
Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo
Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven
Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline
Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott,
Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy,
George Yang, Scott Zuyderduyn, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 34 Row: d Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4502602.
FEATURES Location/Qualifiers
source 1..1578
/db_xref="H-InvDB:HIT000036929"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:23084 IMAGE:4856728"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_15"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1578
/gene="CBX4"
/gene_synonym="hPC2"
/gene_synonym="PC2"
/db_xref="GeneID:8535"
/db_xref="MIM:603079"
CDS 20..892
/gene="CBX4"
/gene_synonym="hPC2"
/gene_synonym="PC2"
/codon_start=1
/product="CBX4 protein"
/protein_id="AAH14967.1"
/db_xref="GeneID:8535"
/db_xref="MIM:603079"
/translation="MELPAVGEHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEP
EENILDPRLLIAFQNRERQEQLMGYRKRGPKPKPLVVQVPTFARRSNVLTGLQDSSTD
NRAKLDLGAQGKGQGHQYELNSKKHHHHAVGLNLSHVRKRCLSETHGEREPCKKRLTA
RSISTPTCLGGSPAAERPADLPPAAALPQPEVILLDSDLDEPIDLRCVKTRSEAGEPP
SSLQVKPETPASAAVAVAAAAAPTTTAEKPPAEAQDEPAESLSEFKPFFGNIIITDVT
ANCLTVTFKEYVTV"
misc_feature 41..163
/gene="CBX4"
/gene_synonym="hPC2"
/gene_synonym="PC2"
/note="chromo; Region: 'chromo' (CHRromatin Organization
MOdifier) domain"
/db_xref="CDD:pfam00385"
BASE COUNT 337 a 482 c 451 g 308 t
ORIGIN
1 ggcgcgctcc ggctcggcca tggagctgcc agctgttggc gagcacgtct tcgcggtgga
61 gagcatcgag aagaagcgga tccgcaaggg cagagtggag tatctggtga aatggagagg
121 ctggtcgccc aaatataaca cgtgggaacc ggaggagaac atcctggacc ccaggctgct
181 gatcgccttc cagaacaggg aacggcagga gcagctgatg ggatatcgga agagagggcc
241 gaagcccaaa ccgctagtgg tgcaggtgcc tacctttgcc cgtcgttcca atgtcctgac
301 cggcctccag gactcctcca ctgacaaccg tgccaagctg gatttgggcg cgcaggggaa
361 gggccagggg catcagtacg agctcaacag caagaagcac caccaccacg ccgtcggcct
421 gaatctctcc cacgtgcgca agcgctgcct ctccgagacc cacggcgagc gcgagccctg
481 caagaagcgg ctgactgcgc gcagcatcag cacccccacc tgcctggggg gcagcccagc
541 cgctgagcgc ccggccgacc tgccaccagc cgccgccctc ccgcagcccg aggtcatcct
601 gctagactca gacctggatg aacccataga cttgcgctgc gtcaagacgc gcagcgaggc
661 cggggagccg cccagctccc tccaggtgaa gcccgagaca ccggcgtcgg cggcggtggc
721 ggtggcggcg gcagcggcac ccaccacgac ggcggagaag cctccagccg aggcccagga
781 cgaacctgca gagtcgctga gcgagttcaa gcccttcttt gggaatataa ttatcaccga
841 cgtcaccgcg aactgcctca ccgttacttt caaggagtac gtgacggtgt agccggaggg
901 cgtcggaagg ggaagcgcca ttcccgcggg ggggcgggga gctgagcacc tggggcctcg
961 gggcgggctc ccctctcgcc aacccgccaa ccgcgagaga cccaggctgg cccccagggt
1021 gaggacgccc ggagcggagg taaccatgtt ccccctgcgg cggctgtcag acctgggcgg
1081 aggccccttc cacgcggtgc cggcggggct cgccctctcc tgcccttccc cgctggagat
1141 ggacccccgg aacggacagg gcagctctgc gcccggcctc agagttctag tattatattt
1201 taaccgtgct aacttgtcaa gtgctgactc tactcccgtt tgtacgtggt gttattattg
1261 aaatgtattg tttgagctca aaaggcccga ccacccccct tcgggctgct atatatatat
1321 ttatttgtag gtatttatat attgaaatat aaaaacctag atttatggag tttcctctag
1381 atcatgttat attctatatc agacaaacta ttttcttttg acctttcttc ccctccatcc
1441 agtatttcgg ttgatttcat tttctcccct ctcttcccct tccacgaact gcaataccag
1501 taaccttggt atatattttt tgatactgta cacatggatg tcttgtttct atgtgcaaaa
1561 aaaaaaaaaa aaaaaaaa
//