LOCUS BC014950 1639 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens carbonic anhydrase IX, mRNA (cDNA clone MGC:22967
IMAGE:4865275), complete cds.
ACCESSION BC014950
VERSION BC014950.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1639)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1639)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 34 Row: i Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 9955947.
FEATURES Location/Qualifiers
source 1..1639
/db_xref="H-InvDB:HIT000036915"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:22967 IMAGE:4865275"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_15"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1639
/gene="CA9"
/gene_synonym="CAIX"
/gene_synonym="MN"
/db_xref="GeneID:768"
/db_xref="HGNC:HGNC:1383"
/db_xref="MIM:603179"
CDS 105..1484
/gene="CA9"
/gene_synonym="CAIX"
/gene_synonym="MN"
/codon_start=1
/product="carbonic anhydrase IX"
/protein_id="AAH14950.1"
/db_xref="GeneID:768"
/db_xref="HGNC:HGNC:1383"
/db_xref="MIM:603179"
/translation="MAPLCPSPWLPLLIPAPAPGLTVQLLLSLLLLMPVHPQRLPRMQ
EDSPLGGGSSGEDDPLGEEDLPSEEDSPREEDPPGEEDLPGEEDLPGEEDLPEVKPKS
EEEGSLKLEDLPTVEAPGDPQEPQNNAHRDKEGDDQSHWRYGGDPPWPRVSPACAGRF
QSPVDIRPQLAAFCPALRPLELLGFQLPPLPELRLRNNGHSVQLTLPPGLEMALGPGR
EYRALQLHLHWGAAGRPGSEHTVEGHRFPAEIHVVHLSTAFARVDEALGRPGGLAVLA
AFLEEGPEENSAYEQLLSRLEEIAEEGSETQVPGLDISALLPSDFSRYFQYEGSLTTP
PCAQGVIWTVFNQTVMLSAKQLHTLSDTLWGPGDSRLQLNFRATQPLNGRVIEASFPA
GVDSSPRAAEPVQLNSCLAAGDILALVFGLLFAVTSVAFLVQMRRQHRRGTKGGVSYR
PAEVAETGA"
BASE COUNT 337 a 500 c 470 g 332 t
ORIGIN
1 cagcctgctc ccctccaggc ttgctcctcc cccacccagc tctcgtttcc aatgcacgta
61 cagcccgtac acaccgtgtg ctgggacacc ccacagtcag ccgcatggct cccctgtgcc
121 ccagcccctg gctccctctg ttgatcccgg cccctgctcc aggcctcact gtgcaactgc
181 tgctgtcact gctgcttctg atgcctgtcc atccccagag gttgccccgg atgcaggagg
241 attccccctt gggaggaggc tcttctgggg aagatgaccc actgggcgag gaggatctgc
301 ccagtgaaga ggattcaccc agagaggagg atccacccgg agaggaggat ctacctggag
361 aggaggatct acctggagag gaggatctac ctgaagttaa gcctaaatca gaagaagagg
421 gctccctgaa gttagaggat ctacctactg ttgaggctcc tggagatcct caagaacccc
481 agaataatgc ccacagggac aaagaagggg atgaccagag tcattggcgc tatggaggcg
541 acccgccctg gccccgggtg tccccagcct gcgcgggccg cttccagtcc ccggtggata
601 tccgccccca gctcgccgcc ttctgcccgg ccctgcgccc cctggaactc ctgggcttcc
661 agctcccgcc gctcccagaa ctgcgcctgc gcaacaatgg ccacagtgtg caactgaccc
721 tgcctcctgg gctagagatg gctctgggtc ccgggcggga gtaccgggct ctgcagctgc
781 atctgcactg gggggctgca ggtcgtccgg gctcggagca cactgtggaa ggccaccgtt
841 tccctgccga gatccacgtg gttcacctca gcaccgcctt tgccagagtt gacgaggcct
901 tggggcgccc gggaggcctg gccgtgttgg ccgcctttct ggaggagggc ccggaagaaa
961 acagtgccta tgagcagttg ctgtctcgct tggaagaaat cgctgaggaa ggctcagaga
1021 ctcaggtccc aggactggac atatctgcac tcctgccctc tgacttcagc cgctacttcc
1081 aatatgaggg gtctctgact acaccgccct gtgcccaggg tgtcatctgg actgtgttta
1141 accagacagt gatgctgagt gctaagcagc tccacaccct ctctgacacc ctgtggggac
1201 ctggtgactc tcggctacag ctgaacttcc gagcgacgca gcctttgaat gggcgagtga
1261 ttgaggcctc cttccctgct ggagtggaca gcagtcctcg ggctgctgag ccagtccagc
1321 tgaattcctg cctggctgct ggtgacatcc tagccctggt ttttggcctc ctttttgctg
1381 tcaccagcgt cgcgttcctt gtgcagatga gaaggcagca cagaagggga accaaagggg
1441 gtgtgagcta ccgcccagca gaggtagccg agactggagc ctagaggctg gatcttggag
1501 aatgtgagaa gccagccaga ggcatctgag ggggagccgg taactgtcct gtcctgctca
1561 ttatgccact tccttttaac tgcaaagaaa ttttttaaaa taaatattta taataaaaaa
1621 aaaaaaaaaa aaaaaaaaa
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