LOCUS BC014668 1081 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens podoplanin, mRNA (cDNA clone MGC:23210 IMAGE:4876446), complete cds. ACCESSION BC014668 VERSION BC014668.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1081) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1081) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (24-SEP-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 34 Row: m Column: 20 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 54792055. FEATURES Location/Qualifiers source 1..1081 /db_xref="H-InvDB:HIT000036847" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:23210 IMAGE:4876446" /tissue_type="Eye, normal, pigmented retinal epithelium" /clone_lib="NIH_MGC_43" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1081 /gene="PDPN" /gene_synonym="GP36" /gene_synonym="Gp38" /gene_synonym="GP40" /gene_synonym="HT1A-1" /gene_synonym="OTS8" /gene_synonym="PA2.26" /gene_synonym="T1A" /gene_synonym="T1A-2" /db_xref="GeneID:10630" /db_xref="HGNC:HGNC:29602" /db_xref="MIM:608863" CDS 6..722 /gene="PDPN" /gene_synonym="GP36" /gene_synonym="Gp38" /gene_synonym="GP40" /gene_synonym="HT1A-1" /gene_synonym="OTS8" /gene_synonym="PA2.26" /gene_synonym="T1A" /gene_synonym="T1A-2" /codon_start=1 /product="podoplanin" /protein_id="AAH14668.2" /db_xref="GeneID:10630" /db_xref="HGNC:HGNC:29602" /db_xref="MIM:608863" /translation="MLTPLGKFSTAKFAVRLPRVWEARAPSLSGAPAPTPPAPPPSRS SRLGLWPRCFLIFPQLRILLLGPQESNNSTGTMWKVSALLFVLGSASLWVLAEGASTG QPEDDTETTGLEGGVAMPGAEDDVVTPGTSEDRYKSGLTTLVATSVNSVTGIRIEDLP TSESTVHAQEQSPSATASNVATSHSTEKVDGDTQTTVEKDGLSTVTLVGIIVGVLLAI GFIGGIIVVVMRKMSGRYSP" BASE COUNT 294 a 281 c 270 g 236 t ORIGIN 1 gataaatgct gactccgctc ggaaagttct caactgcaaa gtttgctgtc cggctgccta 61 gggtctggga agctcgggca ccctccctct ccggggctcc tgctcccacc cctccggccc 121 ccccaccgtc gcgctcctcc aggctgggcc tgtggccgcg gtgcttttta attttccccc 181 agctcagaat cttgctgctc ggcccccagg agagcaacaa ctcaacggga acgatgtgga 241 aggtgtcagc tctgctcttc gttttgggaa gcgcgtcgct ctgggtcctg gcagaaggag 301 ccagcacagg ccagccagaa gatgacactg agactacagg tttggaaggc ggcgttgcca 361 tgccaggtgc cgaagatgat gtggtgactc caggaaccag cgaagaccgc tataagtctg 421 gcttgacaac tctggtggca acaagtgtca acagtgtaac aggcattcgc atcgaggatc 481 tgccaacttc agaaagcaca gtccacgcgc aagaacaaag tccaagcgcc acagcctcaa 541 acgtggccac cagtcactcc acggagaaag tggatggaga cacacagaca acagttgaga 601 aagatggttt gtcaacagtg accctggttg gaatcatagt tggggtctta ctagccatcg 661 gcttcattgg tggaatcatc gttgtggtta tgcgaaaaat gtcgggaagg tactcgccct 721 aaagagctga agggttacgc cctgctgcca acgtgcttaa aaaaagaccg tttctgactc 781 tgtgccctgt ccctgagctc gtgggagaag atgacccgtg gaacacttgc ctggcccact 841 cagaatccac ggtgacctct ccgcttgcca aaataaccga aggaaagacc gttcaccaga 901 cttggctcct ctaaacattt gctgttcaaa catgtttttg aatatacatt ctataaaaga 961 ttatttgaaa gacaaaattc atagaaaatg gagcaaaact gtataaactg atttgtaact 1021 aacactggac cattggatcg atattatatg ctgtaaccat gaaaaaaaaa aaaaaaaaaa 1081 a //