LOCUS BC014548 1745 bp mRNA linear HUM 17-AUG-2004
DEFINITION Homo sapiens ataxin 1, mRNA (cDNA clone IMAGE:4286287), partial
cds.
ACCESSION BC014548
VERSION BC014548.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1745)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1745)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (24-SEP-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 19 Row: m Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4506792.
FEATURES Location/Qualifiers
source 1..1745
/db_xref="H-InvDB:HIT000088433"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4286287"
/tissue_type="Brain, primitive neuroectodermal"
/clone_lib="NIH_MGC_56"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene <1..1745
/gene="ATXN1"
/gene_synonym="ATX1"
/gene_synonym="D6S504E"
/gene_synonym="SCA1"
/db_xref="GeneID:6310"
/db_xref="MIM:601556"
CDS <1..414
/gene="ATXN1"
/gene_synonym="ATX1"
/gene_synonym="D6S504E"
/gene_synonym="SCA1"
/codon_start=1
/product="ATXN1 protein"
/protein_id="AAH14548.1"
/db_xref="GeneID:6310"
/db_xref="MIM:601556"
/translation="GGSRTGPVSLQGDPKQAPWSSSQSNSSRKTLFLSLCPPFPTQPQ
IHLHFTEHRASSHQGGPFKLQICLSSLYSNLLLHCHYREVHHMSGHRTESAGGHLFLP
QDLRWKSPGLGVFAVQSVYELARRHNVSPFYSGPP"
BASE COUNT 526 a 358 c 345 g 516 t
ORIGIN
1 ggggggagcc gtacaggacc tgtttcactg cagggggatc caaaacaagc cccgtggagc
61 agcagccaga gcaacagcag ccgcaagaca ttgtttctct ccctctgccc ccccttcccc
121 acgcaacccc agatccattt acactttaca gagcatcgtg catcaagtca ccagggtggt
181 ccattcaagc tgcagatctg tttgtcatcc ttgtacagca atctcctcct ccactgccac
241 tacagggaag tgcatcacat gtcaggtcac agaacagaaa gtgctggtgg acatctcttc
301 ttgccccaag atcttcgttg gaagtccccg ggacttggtg tctttgccgt tcaaagtgtt
361 tatgaactcg ccaggaggca taatgtgtca ccattttatt ctgggccacc ctaaaggatg
421 acacccagct tcagagacct cctcttggac gacatccctg agaatcaatg ttttagctgt
481 cccatagtct gacgtctgtt tccgaccgct tttgagctgg cgcaggctta gtcattaatg
541 gccaggacga tgttaaatgt tctgcctgat tggcttgcag ctacacacct tttgtcattt
601 gcagagcagc aactccctct tgagctcttg gggagtcttt acacaaatac actagaaaaa
661 aggcacccat ccattttttt tccatcttgg cattagctca caggcatagt cctgggatga
721 cctggagtag aggcagtgga ggataaattc atcttgcaca gacttgtttg tgctagttct
781 agcctgtctc tcgccacaga tctagctttt aaatactcaa gtgattggtt ttgtgtagga
841 atgtgtggat tgttggattg gaagaatttt ctccctggat ttctagtgtt tacataagca
901 gatacaaaaa aaatttgatc actgatttaa atagcagggc ttattttaaa aagttatggg
961 tgcttcaagg tggtacagaa taaaaatgtc agggtttttt tttttttttt tttttaacaa
1021 gtcgtaacac aaccaaaatg tatatattaa tgttttgtca ggaaagggtc aaaatggaaa
1081 atttgcaaca aagacaaact acaatagaac aagtgcaaac agaagctgac aaatatatgc
1141 ccctcgttgg gagttcagcc catggaatgt tatgtaggac aaaaggaatg gaagagatat
1201 ttcagtaaca ttttgttctc tgtcaaaaac cttctgaaat ataaatctgc tgtgtattgg
1261 agaatggata cagcaattga ttcaagttga atagctttca tttaactaga atatcccaca
1321 gaaagcagtt cttgttctga caaccatatt tttgctttct ttcacttaaa gaaaattgaa
1381 ttcatgttta catatcttat agggttgttt tatggacaaa gacacgggtc aaaccccatc
1441 acagtggcta gtgttacaac aaatagaaac atttctaaat gaaataacat ttctaagcca
1501 gggccagtgc ctgcagtaat aatactaggt tggtattatg aagccatttg caactataaa
1561 taattcagtc atagatgtgc tttttttaaa atcctggttt tttaaaattc tagtcttttg
1621 ccaatacaca cacccataca catacttcac ctatttgcat aatagaggag gaatatgaat
1681 atgtatataa taaagtcact ttattttgga cttgcaaaaa aaaaaaaaaa aaaaaaaaaa
1741 aaaaa
//