LOCUS BC014513 1639 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens solute carrier family 9 (sodium/hydrogen exchanger),
member 3 regulator 2, mRNA (cDNA clone IMAGE:2958186), partial cds.
ACCESSION BC014513
VERSION BC014513.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1639)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1639)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (17-SEP-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 9 Row: d Column: 12.
FEATURES Location/Qualifiers
source 1..1639
/db_xref="H-InvDB:HIT000036747"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:2958186"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1639
/gene="SLC9A3R2"
/gene_synonym="E3KARP"
/gene_synonym="NHE3RF2"
/gene_synonym="NHERF-2"
/gene_synonym="NHERF2"
/gene_synonym="OCTS2"
/gene_synonym="SIP-1"
/gene_synonym="SIP1"
/gene_synonym="TKA-1"
/db_xref="GeneID:9351"
/db_xref="HGNC:HGNC:11076"
/db_xref="MIM:606553"
CDS <1..1125
/gene="SLC9A3R2"
/gene_synonym="E3KARP"
/gene_synonym="NHE3RF2"
/gene_synonym="NHERF-2"
/gene_synonym="NHERF2"
/gene_synonym="OCTS2"
/gene_synonym="SIP-1"
/gene_synonym="SIP1"
/gene_synonym="TKA-1"
/codon_start=1
/product="SLC9A3R2 protein"
/protein_id="AAH14513.2"
/db_xref="GeneID:9351"
/db_xref="HGNC:HGNC:11076"
/db_xref="MIM:606553"
/translation="GSRTGAAAEATAGCPAPPPPPSSPAPLPAGGRWAAGAMAAPEPL
RPRLCRLVRGEQGYGFHLHGEKGRRGQFIRRVEPGSPAEAAALRAGDRLVEVNGVNVE
GETHHQVVQRIKAVEGQTRLLVVDQETDEELRRRQLTCTEEMAQRGLPPAHDPWEPKP
DWAHTGSHSSEAGKKDVSGPLRELRPRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDP
GSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVDPETDEHFKRL
RVTPTEEHVEGPLPSPVTNGTSPAQLNGGSACSSRSDLPGSDKDTEDGSAWKQDPFQE
SGLHLSPTAAEAKEKARAMRVNKRAPQMDWNRKREIFSNF"
BASE COUNT 332 a 547 c 530 g 230 t
ORIGIN
1 gggagccgaa caggagccgc cgctgaagcc accgccgggt gcccagcgcc gccgccgccc
61 ccgagctccc ccgcgcccct gcccgcgggc ggccggtggg cagcgggcgc catggccgcg
121 ccggagccgc tgcggccgcg cctgtgccgc ttggtgcgcg gagagcaggg ctacggcttc
181 cacctgcacg gcgagaaggg ccgccgcggg cagttcatcc ggcgcgtgga acccggttcc
241 cccgccgagg ccgccgcgct gcgcgctggg gaccgcctgg tcgaggtcaa cggcgtcaac
301 gtggagggcg agacgcacca ccaggtggtg caaaggatca aggctgtgga ggggcagact
361 cggctgctgg tggtggacca ggagacagat gaggagctcc gccggcggca gctgacctgt
421 accgaggaga tggcccagcg agggctccca cccgcccacg acccctggga gccgaagcca
481 gactgggcac acaccggcag ccacagctcc gaagctggca agaaggatgt cagtgggccc
541 ctgagggagc tgcgccctcg gctctgccac ctgcgaaagg gacctcaggg ctatgggttc
601 aacctgcata gtgacaagtc ccggcccggc cagtacatcc gctctgtgga cccgggctca
661 cctgccgccc gctctggcct ccgcgcccag gaccggctca ttgaggtgaa cgggcagaat
721 gtggagggac tgcgccatgc tgaggtggtg gccagcatca aggcacggga ggacgaggcc
781 cggctgctgg tcgtggaccc cgagacagat gaacacttca agcggcttcg ggtcacaccc
841 accgaggagc acgtggaagg tcctctgccg tcacccgtca ccaatggaac cagccctgcc
901 cagctcaatg gtggctctgc gtgctcgtcc cgaagtgacc tgcctggttc cgacaaggac
961 actgaggatg gcagtgcctg gaagcaagat cccttccagg agagcggcct ccacctgagc
1021 cccacggcgg ccgaggccaa ggagaaggct cgagccatgc gagtcaacaa gcgcgcgcca
1081 cagatggact ggaacaggaa gcgtgaaatc ttcagcaact tctgagcccc ttcctgcctg
1141 tctcgggacc ctgggacccc tcccgcacgg accttgggcc tcagcctgcc ccgagctccc
1201 ccagcctcag tggactggag ggtggtcctg ccattgccca gaaatcagcc ccagccccgg
1261 tgagccccca tcctgcccct gcccaccagg tactgggggc ctgtggcagc aagatagggg
1321 gagagagacc cagagatgtg agagagagtc agagacagag acagagagag agagagagag
1381 acacagagag agacagagag agagcgagcg agcgcgcggc agccgcgggg cgagggcctt
1441 tgctgctctg ccggggcctg ctgactgaaa ggaatttgtg tttttgcttt ttttccaaaa
1501 agatctccag ctccacacat gtttccactt aataccagag accccccccc cttcccctcc
1561 cccttcccct cccccttggg acgcgctcta aataattgca ataaaacaaa cctttctctg
1621 caaaaaaaaa aaaaaaaaa
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