LOCUS BC014477 1899 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens homeobox D1, mRNA (cDNA clone MGC:23144
IMAGE:4869019), complete cds.
ACCESSION BC014477
VERSION BC014477.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1899)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1899)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (17-SEP-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 34 Row: l Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13375631.
FEATURES Location/Qualifiers
source 1..1899
/db_xref="H-InvDB:HIT000036726"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:23144 IMAGE:4869019"
/tissue_type="Skin, melanotic melanoma, high MDR."
/clone_lib="NIH_MGC_49"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1899
/gene="HOXD1"
/gene_synonym="Hox-4.7"
/db_xref="GeneID:3231"
/db_xref="HGNC:HGNC:5132"
/db_xref="MIM:142987"
CDS 128..1114
/gene="HOXD1"
/gene_synonym="Hox-4.7"
/codon_start=1
/product="homeobox D1"
/protein_id="AAH14477.1"
/db_xref="GeneID:3231"
/db_xref="HGNC:HGNC:5132"
/db_xref="MIM:142987"
/translation="MSSYLEYVSCSSSGGVGGDVLSLAPKFCRSDARPVALQPAFPLG
NGDGAFVSCLPLAAARPSPSPPAAPARPSVPPPAAPQYAQCTLEGAYEPGAAPAAAAG
GADYGFLGSGPAYDFPGVLGRAADDGGSHVHYATSAVFSGGGSFLLSGQVDYAAFGEP
GPFSACLKASADGHPGAFQTASPAPGTYPKSVSPASGLPAAFSTFEWMKVKRNASKKG
KLAEYGAASPSSAIRTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLHLNDTQVKIW
FQNRRMKQKKREREGLLATAIPVAPLQLPLSGTTPTKFIKNPGSPSQSQEPS"
BASE COUNT 424 a 548 c 494 g 433 t
ORIGIN
1 gttggagagg gcagctcggg tagagagggc tggcggagcg gcgcagacgg cggcagtcct
61 gctcagcctc tgcccggctc cgtactccgg ccccggcctg cgccctcaga aaggtggggc
121 ccgaaccatg agctcctacc tggagtacgt gtcatgcagc agcagcggcg gggtcggcgg
181 cgacgtgctc agcttggcac ccaagttctg ccgctccgac gcccggcccg tggctctgca
241 gcccgccttc cctctgggca acggcgacgg cgccttcgtc agctgtctgc ccctggccgc
301 cgcccgaccc tcgccttcgc ccccggccgc ccccgcgcgg ccgtccgtac cgcctccggc
361 cgcgccccag tacgcgcagt gcaccctgga gggggcctac gaacctggtg ccgcacctgc
421 cgcggcagct gggggcgcgg actacggctt cctggggtcc gggccggcgt acgacttccc
481 gggcgtgctg gggcgggcgg ccgacgacgg cgggtctcac gtccactacg ccacctcggc
541 cgtcttctcg ggcggcggct ctttcctcct cagcggccag gtggattacg cggccttcgg
601 cgaacccggc cctttttcgg cttgtctcaa agcgtcagcc gacggccacc ctggtgcttt
661 ccagaccgca tccccggccc caggcaccta ccccaagtcc gtctctcccg cctccggcct
721 ccctgccgcc ttcagcacgt tcgagtggat gaaagtgaag aggaatgcct ctaagaaagg
781 caaactcgcc gagtatgggg ccgctagccc ctccagcgcg atccgcacga atttcagcac
841 caagcaactg acagaactgg aaaaagagtt tcatttcaat aagtacttaa ctcgagcccg
901 gcgcatcgag atagccaact gcttgcacct gaatgacacg caagtcaaaa tctggttcca
961 gaaccgcagg atgaaacaga agaaaaggga acgagaaggg cttctggcca cggccattcc
1021 tgtggctccc ctccaacttc ccctctctgg aacaaccccc actaagttta tcaagaaccc
1081 cggcagccct tctcagtccc aagagccttc gtgaggccgg tacttggggc cgaaaaactg
1141 tggcctgcag aagtcccagg cgacccccat ccctatctag acttaggagc tcagtttggg
1201 atggaggtgg gagaacaaaa atgaataggg atttcacttg ggaaatgaag tactttagtt
1261 ggcttccgag ttccagacta tatgtccaga tattaattga ctgtcttgta agccacttgt
1321 ttggttatga tttgtgtctt atcagggaaa aggtgcccag ctgccagccc agctccgctg
1381 ctatctttgc ctcacttagt catgtgcaat tcgcgttgca gagtggcaga ccattagttg
1441 ctgagttctg tcagcactct gatgtgctca gaagagcacc tgcccaaagt ttttctggtt
1501 ttaatttaaa ggacaaggct acatatattc agctttttga gatgaccaaa gctagttagg
1561 gtctccttga tgtagctaag ctgcttcagt gatcttcaca tttgcactcc agtttttttt
1621 tctttaaaaa agcggtttct acctctctat gtgcctgagt gatgatacaa tcgctgttta
1681 gttactagat gaacaaatcc acagaatggg taaagagtag aatctgaact atatcttgac
1741 aaatattatt caaacttgaa tgtaaatata tacagtatgt atatttttta aaaagatttg
1801 cttgcaatga ccttataagt gacatttaat gtcatagcat gtaaagggtt ttttttgtaa
1861 taaaaattat agaatctgca aaaaaaaaaa aaaaaaaaa
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