LOCUS BC014444 1566 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens sphingomyelin phosphodiesterase, acid-like 3B, mRNA
(cDNA clone MGC:22988 IMAGE:4865268), complete cds.
ACCESSION BC014444
VERSION BC014444.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1566)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1566)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (17-SEP-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 34 Row: i Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 57242797.
FEATURES Location/Qualifiers
source 1..1566
/db_xref="H-InvDB:HIT000036703"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:22988 IMAGE:4865268"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_15"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1566
/gene="SMPDL3B"
/gene_synonym="ASML3B"
/db_xref="GeneID:27293"
/db_xref="HGNC:HGNC:21416"
CDS 147..1268
/gene="SMPDL3B"
/gene_synonym="ASML3B"
/codon_start=1
/product="sphingomyelin phosphodiesterase, acid-like 3B"
/protein_id="AAH14444.1"
/db_xref="GeneID:27293"
/db_xref="HGNC:HGNC:21416"
/translation="MRLLAWLIFLANWGGARAEPGKFWHIADLHLDPDYKVSKDPFQV
CPSAGSQPVPDAGPWGDYLCDSPWALINSSIYAMKEIEPEPDFILWTGDDTPHVPDEK
LGEAAVLEIVERLTKLIREVFPDTKVYAALGNHDFHPKNQFPAGSNNIYNQIAELWKP
WLSNESIALFKKGAFYCEKLPGPSGAGRIVVLNTNLYYTSNALTADMADPGQQFQWLE
DVLTDASKAGDMVYIVGHVPPGFFEKTQNKAWFREGFNEKYLKVVRKHHRVIAGQFFG
HHHTDSFRMLYDDAGVPISAMFITPGVTPWKTTLPGVVNGANNPAIRVFEYDRATLSL
KVRSPAEARGGGWEGLKCITTFPHSQLIHLPLTTEPQEG"
BASE COUNT 389 a 452 c 397 g 328 t
ORIGIN
1 gacgccttgg aggacttgga acacctgtaa caggacaagg agtcctgctc cggcacgtgg
61 ccacagaaaa ctacttagga agcctgtggt gagaacaaca acagtgcctg gagaatccca
121 cggctctggg gaagtgagcc ccgaggatga ggctgctcgc ctggctgatt ttcctggcta
181 actggggagg tgccagggct gaaccaggga agttctggca catcgctgac ctgcaccttg
241 accctgacta caaggtatcc aaagacccct tccaggtgtg cccatcagct ggatcccagc
301 cagtgcccga cgcaggcccc tggggtgact acctctgtga ttctccctgg gccctcatca
361 actcctccat ctatgccatg aaggagattg agccagagcc agacttcatt ctctggactg
421 gtgatgacac gcctcatgtg cccgatgaga aactgggaga ggcagctgta ctggaaattg
481 tggaacgcct gaccaagctc atcagagagg tctttccaga tactaaagtc tatgctgctt
541 tgggaaatca tgattttcac cccaaaaacc agttcccagc tggaagtaac aacatctaca
601 atcagatagc agaactatgg aaaccctggc ttagtaatga gtccatcgct ctcttcaaaa
661 aaggtgcctt ctactgtgag aagctgccgg gtcccagcgg ggctgggcga attgtggtcc
721 tcaacaccaa tctgtactat accagcaatg cgctgacagc agacatggcg gaccctggcc
781 agcagttcca gtggctggaa gatgtgctga ccgatgcatc caaagctggg gacatggtgt
841 acattgtcgg ccacgtgccc ccggggttct ttgagaagac gcaaaacaag gcatggttcc
901 gggagggctt caatgaaaaa tacctgaagg tggtccggaa gcatcatcgc gtcatagcag
961 ggcagttctt cgggcaccac cacaccgaca gctttcggat gctctatgat gatgcaggtg
1021 tccccataag cgccatgttc atcacacctg gagtcacccc atggaaaacc acattacctg
1081 gagtggtcaa tggggccaac aatccagcca tccgggtgtt cgaatatgac cgagccacac
1141 tgagcctgaa ggtcaggagt cctgcggagg ccagaggagg agggtgggag gggcttaaat
1201 gcatcaccac cttccctcac tctcagctta tccaccttcc cctgaccact gagcctcagg
1261 aaggttgagc tccttccacc cttctccagc tcaggatcag aaccctggag gcacctgcca
1321 ccgagtcagg gcagtgcctc accaagtcac cttttcccct ggatgactgt cacagcctca
1381 tacctggtct ccctgcctct ggccctgccc tgctatggcc catccgctac acaagagaga
1441 agaaactaat ctcctatagc accactttca tcttgtctcc gtcctgctca aaaaccttca
1501 gtggctcccc agtgccttca agataaagtt gtgtctcctt gacctagtaa aaaaaaaaaa
1561 aaaaaa
//