LOCUS BC014432 1178 bp mRNA linear HUM 22-AUG-2008
DEFINITION Homo sapiens PDZ domain containing ring finger 3, mRNA (cDNA clone
IMAGE:4639477), complete cds.
ACCESSION BC014432
VERSION BC014432.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1178)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1178)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (17-SEP-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 29 Row: k Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 57529736
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1178
/db_xref="H-InvDB:HIT000036695"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4639477"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1178
/gene="PDZRN3"
/gene_synonym="LNX3"
/gene_synonym="SEMACAP3"
/db_xref="GeneID:23024"
/db_xref="HGNC:HGNC:17704"
/db_xref="MIM:609729"
CDS 16..1098
/gene="PDZRN3"
/gene_synonym="LNX3"
/gene_synonym="SEMACAP3"
/codon_start=1
/product="PDZRN3 protein"
/protein_id="AAH14432.1"
/db_xref="GeneID:23024"
/db_xref="HGNC:HGNC:17704"
/db_xref="MIM:609729"
/translation="MGFELDRFDGDVDPDLKCALCHKVLEDPLTTPCGHVFCAGCVLP
WVVQEGSCPARCRGRLSAKELNHVLPLKRLILKLDIKCAYATRGCGRVVKLQQLPEHL
ERCDFAPARCRHAGCGQVLLRRDVEAHMRDACDARPVGRCQEGCGLPLTHGEQRAGGH
CCARALRAHNGALQARLGALHKALKKEALRAGKREKSLVAQLAAAQLELQMTALRYQK
KFTEYSARLDSLSRCVAAPPGGKGEETKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGS
SSEGIFVSKIVDSGPAAKEGGLQIHDRIIEMRKLELRTVKLPKAHSQDSNAGFIPQLL
SLHTPPLSCEKGGGHLACGGAYLNCI"
BASE COUNT 254 a 350 c 381 g 193 t
ORIGIN
1 ggcctggccg ccaccatggg cttcgagctg gaccgcttcg acggcgacgt ggacccggac
61 ctgaagtgcg cgctgtgcca caaggtcctg gaggacccgc tgaccacgcc gtgcggccac
121 gtcttctgcg ccggctgcgt gctgccctgg gtggtgcagg agggcagctg cccggcgcgc
181 tgccgcggtc gcctgtcggc caaagagctc aaccacgtcc tgccgctcaa gcgccttatc
241 ctcaagctgg acatcaagtg cgcgtacgcg acgcgcggct gcggccgggt ggtcaagctg
301 cagcagctgc cggagcacct cgagcgctgc gacttcgcgc ccgcgcgctg tcgccacgcg
361 ggttgcggcc aggtgctgct gcggcgcgac gtggaggcgc acatgcgcga cgcgtgcgac
421 gcgcggccag tgggccgctg ccaggagggc tgcgggctac ccttgacgca cggcgagcag
481 cgcgcgggcg gccactgctg cgcgcgagcg ctgcgggcgc acaacggcgc gctccaggcc
541 cgcctgggcg cgctgcacaa ggcgctcaag aaggaggcgc tgcgcgctgg gaagcgcgag
601 aagtcgctgg tggcccagct ggccgcggcg cagcttgagc tgcagatgac cgcgctgcgc
661 taccagaaga aattcaccga atacagcgcg cgcctcgact cgctcagccg ctgcgtggcc
721 gcgccgcccg gcggcaaggg cgaagaaacc aaaagtctga ctcttgtcct gcatcgggac
781 tccggctccc tgggattcaa tattattggt ggccggccga gtgtggataa ccacgatgga
841 tcatccagtg aaggaatctt tgtatccaag atagttgaca gtgggcctgc agccaaggaa
901 ggaggcctgc aaattcatga caggattatt gagatgagaa aactggaact gagaacagtt
961 aaattgccca aagcccacag ccaggattcc aacgctggct tcatcccaca attgctgtcc
1021 ctgcacactc cacctctgag ctgtgaaaaa ggaggaggtc atctggcttg tggaggggct
1081 tatttgaact gtatttgatt gaaaactgca tgggctacta aaattgtttt cttgggaaaa
1141 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaa
//