LOCUS BC014253 1603 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens Yip1 domain family, member 5, mRNA (cDNA clone
MGC:20982 IMAGE:4635110), complete cds.
ACCESSION BC014253
VERSION BC014253.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1603)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1603)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (10-SEP-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC014253.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 30 Row: n Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..1603
/db_xref="H-InvDB:HIT000036602"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:20982 IMAGE:4635110"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1603
/gene="YIPF5"
/gene_synonym="FinGER5"
/gene_synonym="SB140"
/gene_synonym="SMAP-5"
/gene_synonym="SMAP5"
/gene_synonym="YIP1A"
/db_xref="GeneID:81555"
/db_xref="HGNC:HGNC:24877"
CDS 129..902
/gene="YIPF5"
/gene_synonym="FinGER5"
/gene_synonym="SB140"
/gene_synonym="SMAP-5"
/gene_synonym="SMAP5"
/gene_synonym="YIP1A"
/codon_start=1
/product="Yip1 domain family, member 5"
/protein_id="AAH14253.1"
/db_xref="GeneID:81555"
/db_xref="HGNC:HGNC:24877"
/translation="MSGFENLNTDFYQTSYSIDDQSQQSYDYGGSGGPYSKQYAGYDY
SQQGRFVPPDMMQPQQPYTGQIYQPTQAYTPASPQPFYGNNFEDEPPLLEELGINFDH
IWQKTLTVLHPLKVADGSIMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGC
LGMFCLLNLMSMTGVSFGCVASVLGYCLLPMILLSSFAVIFSLQGMVGIILTAGIIGW
CSFSASKIFISALAMEGQQLLVAYPCALLYGVFALISVF"
BASE COUNT 448 a 328 c 373 g 454 t
ORIGIN
1 gttctttggc cctgtgacac gtagcaacgg ggctggttca gggtctgaaa cagagtttgg
61 gggttgtttg ggattagtga agctactgcc tttgccgcca gcgcagcctc agagtttgat
121 tatttgcaat gtcaggcttt gaaaacttaa acacggattt ctaccagaca agttacagca
181 tcgatgatca gtcacagcag tcctatgatt atggaggaag tggaggaccc tatagcaaac
241 agtatgctgg ctatgactat tcgcagcaag gcagatttgt ccctccagac atgatgcagc
301 cacaacagcc atacaccggg cagatttacc agccaactca ggcatatact ccagcttcac
361 ctcagccttt ctatggaaac aactttgagg atgagccacc tttattagaa gagttaggta
421 tcaattttga ccacatctgg caaaaaacac taacagtatt acatccgtta aaagtagcag
481 atggcagcat catgaatgaa actgatttgg caggtccaat ggttttttgc cttgcttttg
541 gagccacatt gctactggct ggcaaaatcc agtttggcta tgtatacggg atcagtgcaa
601 ttggatgtct aggaatgttt tgtttattaa acttaatgag tatgacaggt gtttcatttg
661 gttgtgtggc aagtgtcctt ggatattgtc ttctgcccat gatcctactt tccagctttg
721 cagtgatatt ttctttgcaa ggaatggtag gaatcattct cactgctggg attattggat
781 ggtgtagttt ttctgcttcc aaaatattta tttctgcatt agccatggaa ggacagcaac
841 ttttagtagc atatccttgc gctttgttat atggagtctt tgccctgatt tccgtctttt
901 gaaaatttat ctgggatgtg gacatcagtg ggccagatgt acaaaaagga ccttgaactc
961 ttaaattgga ccagcaaact gctgcagcgc aactctcatg cagatttaca tttgactgtt
1021 ggagcaatga aagtaaacgt gtatctcttg ttcattttta tagaactttt gcatactata
1081 ttggatttac ctgcggtgtg actagcttta aatgtttgtg tttatacaga taagaaatgc
1141 tatttctttc tggttcctgc agccattgaa aaaccttttt ccttgcaaat tataatgttt
1201 ttgatagatt tttatcaact gtgggaaacc aaacacaaag ctgataacct ttcttaaaaa
1261 cgacccagtc acagtaaaga agacacaaga cggccgggcg tggtagctca cgcctgtaat
1321 cccagcactt tgggaggccg aggcgggcgg atcacaaggg caggagatcg agaccatcct
1381 ggttaacacg gtgaaacccc gactctacta aaactacaaa aaaattagct gggcgtggtg
1441 gcgggcgcct gtagtcccag ctactcagga ggctgaggca ggagaaaagt gtgaacccag
1501 gaggcggagc ttgcagtgag ccgagatcac accactgcac tccatccagc ctgggtgaca
1561 gggtgagact ctgtctcaaa aaaaaaaaaa aaaaaaaaaa aaa
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