LOCUS BC014205 4290 bp mRNA linear HUM 23-DEC-2003
DEFINITION Homo sapiens neural cell adhesion molecule 1, mRNA (cDNA clone
IMAGE:4584893), partial cds.
ACCESSION BC014205
VERSION BC014205.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4290)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4290)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (10-SEP-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 19, 2003 this sequence version replaced BC014205.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 30 Row: l Column: 21.
FEATURES Location/Qualifiers
source 1..4290
/db_xref="H-InvDB:HIT000088321"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4584893"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..4290
/gene="NCAM1"
/gene_synonym="CD56"
/gene_synonym="NCAM"
/db_xref="GeneID:4684"
/db_xref="MIM:116930"
CDS <1..1807
/gene="NCAM1"
/gene_synonym="CD56"
/gene_synonym="NCAM"
/codon_start=2
/product="NCAM1 protein"
/protein_id="AAH14205.2"
/db_xref="GeneID:4684"
/db_xref="MIM:116930"
/translation="EDDEKYIFSDDSSQLTIKKVDKNDEAEYICIAENKAGEQDATIH
LKVFAKPKITYVENQTAMELEEQVTLTCEASGDPIPSITWRTSTRNISSEEKASWTRP
EKQETLDGHMVVRSHARVSSLTLKSIQYTDAGEYICTASNTIGQDSQSMYLEVQYAPK
LQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLE
VTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQVEPYSSTAQVQFDEPE
ATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNG
KGLGEISAASEFKTQPVQGEPSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLVRY
RALSSEWKPEIRLPSGSDHVMLKSLDWNADYEVYVVAENQQGKSKAAHFVFRTSAQPT
AIPANGSPTSGLSTGAIVGILIVIFVLLLVVVDITCYFLNKCGLFMCIAVNLCGKAGP
GAKGKDMEEGKAAFSKDESKEPIVEVRTEEERTPNHDGGKHTEPNETTPLTEPEKGPV
EAKPECQETETKPAPAEVKTVPNDATQTKENESKA"
misc_feature 2..136
/gene="NCAM1"
/gene_synonym="CD56"
/gene_synonym="NCAM"
/note="IGcam; Region: Immunoglobulin domain cell adhesion
molecule (cam) subfamily"
/db_xref="CDD:cd00931"
misc_feature 197..466
/gene="NCAM1"
/gene_synonym="CD56"
/gene_synonym="NCAM"
/note="IG_like; Region: Immunoglobulin like"
/db_xref="CDD:cd00097"
misc_feature 512..745
/gene="NCAM1"
/gene_synonym="CD56"
/gene_synonym="NCAM"
/note="IG_like; Region: Immunoglobulin like"
/db_xref="CDD:cd00097"
misc_feature 752..1045
/gene="NCAM1"
/gene_synonym="CD56"
/gene_synonym="NCAM"
/note="FN3; Region: Fibronectin type 3 domain"
/db_xref="CDD:cd00063"
misc_feature 1073..1315
/gene="NCAM1"
/gene_synonym="CD56"
/gene_synonym="NCAM"
/note="fn3; Region: Fibronectin type III domain"
/db_xref="CDD:pfam00041"
BASE COUNT 1209 a 1023 c 1029 g 1029 t
ORIGIN
1 ggaagacgat gagaagtaca tcttcagcga cgatagttcc cagctgacca tcaaaaaggt
61 ggataagaac gacgaggctg agtacatctg cattgctgag aacaaggctg gcgagcagga
121 tgcgaccatc cacctcaaag tctttgcaaa acccaaaatc acatatgtag agaaccagac
181 tgccatggaa ttagaggagc aggtcactct tacctgtgaa gcctccggag accccattcc
241 ctccatcacc tggaggactt ctacccggaa catcagcagc gaagaaaagg cttcgtggac
301 tcgaccagag aagcaagaga ctctggatgg gcacatggtg gtgcgtagcc atgcccgtgt
361 gtcgtcgctg accctgaaga gcatccagta cactgatgcc ggagagtaca tctgcaccgc
421 cagcaacacc atcggccagg actcccagtc catgtacctt gaagtgcaat atgccccaaa
481 gctacagggc cctgtggctg tgtacacttg ggaggggaac caggtgaaca tcacctgcga
541 ggtatttgcc tatcccagtg ccacgatctc atggtttcgg gatggccagc tgctgccaag
601 ctccaattac agcaatatca agatctacaa caccccctct gccagctatc tggaggtgac
661 cccagactct gagaatgatt ttgggaacta caactgtact gcagtgaacc gcattgggca
721 ggagtccttg gaattcatcc ttgttcaagc agacaccccc tcttcaccat ccatcgacca
781 ggtggagcca tactccagca cagcccaggt gcagtttgat gaaccagagg ccacaggtgg
841 ggtgcccatc ctcaaataca aagctgagtg gagagcagtg ggtgaagaag tatggcattc
901 caagtggtat gatgccaagg aagccagcat ggagggcatc gtcaccatcg tgggcctgaa
961 gcccgaaaca acttacgccg taaggctggc ggcgctcaat ggcaaagggc tgggtgagat
1021 cagcgcggcc tccgagttca agacgcagcc agtccaaggg gaacccagtg cacctaagct
1081 cgaagggcag atgggagagg atggaaactc tattaaagtg aacctgatca agcaggatga
1141 cggcggctcc cccatcagac actatctggt caggtaccga gcgctctcct ccgagtggaa
1201 accagagatc aggctcccgt ctggcagtga ccacgtcatg ctgaagtccc tggactggaa
1261 tgctgattat gaggtctacg tggtggctga gaaccagcaa ggaaaatcca aggcggctca
1321 ttttgtgttc aggacctcgg cccagcccac agccatccca gccaacggca gccccacctc
1381 aggcctgagc accggggcca tcgttggcat cctcatcgtc atcttcgtcc tgctcctggt
1441 ggttgtggac atcacctgct acttcctgaa caagtgtggc ctgttcatgt gcattgcggt
1501 caacctgtgt ggaaaagccg ggcccggggc caagggcaag gacatggagg agggcaaggc
1561 cgccttctcg aaagatgagt ccaaggagcc catcgtggag gttcgaacgg aggaggagag
1621 gaccccaaac catgatggag ggaaacacac agagcccaac gagaccacgc cactgacgga
1681 gcccgagaag ggccccgtag aagcaaagcc agagtgccag gagacagaaa cgaagccagc
1741 gccagccgaa gtcaagacgg tccccaatga cgccacacag acaaaggaga acgagagcaa
1801 agcatgatgg gtgaagagaa ccgagcaaag atcaaaataa aaagtgacac agcagcttca
1861 ccagagcatt tccaacacca cagacacaca cacgcacgca cacacacaaa cacacatgca
1921 cacacacaca tctcatttct ctagtgtctt ttgcctttaa aaaaaactaa acagataaaa
1981 catgggaatc tcctttttgt aggtttatag aaagggtccc tttgttgcac actcacttgt
2041 aagaaaatga gacaaaaagg ttaaacccac agccaaacta ggacactccg ttccctgaaa
2101 ccgttaaaaa atcaaacaaa aggaccccaa attaagaatc taggaagctc agaaacgaaa
2161 tctaggttca ggaagaccac acttggtgtt acccgattgg cacagaccag tttcagagaa
2221 atactttcag gcactaagac taatcgaatg aacaaagtcc acagtttatt tttatacttt
2281 cagtcaagtt tgaactctgt aaaacctcat aaataagtta taatttctgt tcactttgta
2341 tttgttcagt atgcaaagtg tgtcaccctt tctagctgaa ttcaattccc acgtagactc
2401 ttattttata ggacgaatgc caaattgcag cttctggggg tagatctcaa tttgcagtat
2461 tcagacttct ttttctttct ttcacattct tttttctttc tttctttctg ccaactttgt
2521 tttccagtgt ttacaaggtg acaaatgttt gactttggtt gtgtttaaat gtccgtgtaa
2581 aatagctgcc ttttattttt taaggtaaca aataccacct agaggtaggt aggatcatcc
2641 cacgcttgct ttagcacagg acaactttac aaaacatgat tgtttacagc tgctcttccc
2701 ctcttttctg atctgcagtt tttgcctggg tcccactcag gtgaaaatcc atctcattct
2761 ggaatggttt tgcttttgaa tttttggtta tttttgtgtt tctttggggg ttagaccact
2821 ttctgattag ccgccacctg cctgcatctg tgaaaaggga tctgctccca ggcgttctca
2881 cccttctttt gaaggactcc ttaggctttg ttgaatgaag cagagaagat tgtatagttg
2941 gggctggtct tggtgaacac acattattac cccacacatc ccctttgtgt agaaagccaa
3001 ataaaatcta tacataccat ttccttttga gcccagaatc tagatttgag cggaagagca
3061 tgtgtgcttc agggaattag tgtctttttt tggaaatctg ttgaagtaaa gtaacatcgg
3121 ccttctgttc acttaggcag catttataga aacaaaagaa gaaagaaaca acctactgtc
3181 tggagtcata acacaacttt cctggattgg aaaccaagtg ggggaaaaaa tacagaaact
3241 ttaaggggga tgggaggggg gggagaaggg aaaagccagc cctttgtata gaaattttgc
3301 ttttttttcc ctcattctac tttagaactg caagcttgtg cactgtggat gcgtgaatat
3361 tttagtgtga aacgtgtttt tgtcatagta ttgaaataaa acttcaacat agtttggttg
3421 tggaaggtat agcagatagt tcagaaaaaa tattcaggaa acaaaaatca ctcaaacgga
3481 atcgaagcct tttaacaaag aaaatgaaat acagatgatg atgatgatga tgaagatgat
3541 gctaagtaaa cagaaatcag tactccgcat gcgctcctct cctaaggtac aaagcagcaa
3601 gaggttaggg tggcaaggct gcctctgggt ccattctgtg ggccactctc cccaacgttc
3661 tgacacttct gcagtctgat cagtggcgat gctagattat aatttcaaac tgtgaagaat
3721 aatggtcttg tcatttgctc aatgtggggt tatgttgcat tttctcagct cctggggatg
3781 gaaatggagg atcccagaac acacagccct ggcccctttg attctagggc ctgcacagat
3841 ctctggttca aatgcacagg ccctcagaat agaggaacat gaagagagat cttagagcac
3901 acagtagaat gtgagagcct gggtgtctga gaccgggagg gcccagcagt gaggggcagg
3961 ctcttctggt caccaggctg ttcagtggac tcagttcttc atcttgtaat gtcgatggct
4021 ttgccacacc aggccaagcc catgccatac cttgtcaaga ctgtcaaagt ggttgtggtt
4081 aggtcaaact ggttttggtt ctgatggtta ggaagaaaca ggtcagccct cagatcacct
4141 ggcccgggac agctgacccc ctagaaccct ggctctgcca ttagctagga cctaagactc
4201 tgcccacatt ttggtctgtt ctctcccatt acacataggt ttgtctcagc atgcaagagt
4261 ttttccttta aaaaaaaaaa aaaaaaaaaa
//