LOCUS BC014058 1384 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens presenilin associated, rhomboid-like, mRNA (cDNA clone
MGC:19916 IMAGE:3937238), complete cds.
ACCESSION BC014058
VERSION BC014058.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1384)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1384)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (10-SEP-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 19, 2003 this sequence version replaced BC014058.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 28 Row: f Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 51871612.
FEATURES Location/Qualifiers
source 1..1384
/db_xref="H-InvDB:HIT000036494"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:19916 IMAGE:3937238"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1384
/gene="PARL"
/gene_synonym="PRO2207"
/gene_synonym="PSARL1"
/gene_synonym="PSENIP2"
/gene_synonym="RHBDS1"
/db_xref="GeneID:55486"
/db_xref="HGNC:HGNC:18253"
/db_xref="MIM:607858"
CDS 21..1160
/gene="PARL"
/gene_synonym="PRO2207"
/gene_synonym="PSARL1"
/gene_synonym="PSENIP2"
/gene_synonym="RHBDS1"
/codon_start=1
/product="presenilin associated, rhomboid-like"
/protein_id="AAH14058.1"
/db_xref="GeneID:55486"
/db_xref="HGNC:HGNC:18253"
/db_xref="MIM:607858"
/translation="MAWRGWAQRGWGCGQAWGASVGGRSCEELTAVLTPPQLLGRRFN
FFIQQKCGFRKAPRKVEPRRSDPGTSGEAYKRSALIPPVEETVFYPSPYPIRSLIKPL
FFTVGFTGCAFGSAAIWQYESLKSRVQSYFDGIKADWLDSIRPQKEGDFRKEINKWWN
NLSDGQRTVTGIIAANVLVFCLWRVPSLQRTMIRYFTSNPASKVLCSPMLLSTFSHFS
LFHMAANMYVLWSFSSSIVNILGQEQFMAVYLSAGVISNFVSYVGKVATGRYGPSLGA
SGAIMTVLAAVCTKIPEGRLAIIFLPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAA
HLGGALFGIWYVTYGHELIWKNREPLVKIWHEIRTNGPKKGGGSK"
BASE COUNT 366 a 284 c 362 g 372 t
ORIGIN
1 gtggggcaga ggttgggaag atggcgtggc gaggctgggc gcagagaggc tggggctgcg
61 gccaggcgtg gggtgcgtcg gtgggcggcc gcagctgcga ggagctcact gcggtcctaa
121 ccccgccgca gctcctcgga cgcaggttta acttctttat tcaacaaaaa tgcggattca
181 gaaaagcacc caggaaggtt gaacctcgaa gatcagaccc agggacaagt ggtgaagcat
241 acaagagaag tgctttgatt cctcctgtgg aagaaacagt cttttatcct tctccctatc
301 ctataaggag tctcataaaa cctttatttt ttactgttgg gtttacaggc tgtgcatttg
361 gatcagctgc tatttggcaa tatgaatcac tgaaatccag ggtccagagt tattttgatg
421 gtataaaagc tgattggttg gatagcataa gaccacaaaa agaaggagac ttcagaaagg
481 agattaacaa gtggtggaat aacctaagtg atggccagcg gactgtgaca ggtattatag
541 ctgcaaatgt ccttgtattc tgtttatgga gagtaccttc tctgcagcgg acaatgatca
601 gatatttcac atcgaatcca gcctcaaagg tcctttgttc tccaatgttg ctgtcaacat
661 tcagtcattt ctccttattt cacatggcag caaatatgta tgttttgtgg agcttctctt
721 ccagcatagt gaacattctg ggtcaagagc agttcatggc agtgtaccta tctgcaggtg
781 ttatttccaa ttttgtcagt tacgtgggta aagttgccac aggaagatat ggaccatcac
841 ttggtgcatc tggtgccatc atgacagtcc tcgcagctgt ctgcactaag atcccagaag
901 ggaggcttgc cattattttc cttccgatgt tcacgttcac agcagggaat gccctgaaag
961 ccattatcgc catggataca gcaggaatga tcctgggatg gaaatttttt gatcatgcgg
1021 cacatcttgg gggagctctt tttggaatat ggtatgttac ttacggtcat gaactgattt
1081 ggaagaacag ggagccgcta gtgaaaatct ggcatgaaat aaggactaat ggccccaaaa
1141 aaggaggtgg ctctaagtaa aactgggatt ggacagtagt ggtgcatctg gtccttgccg
1201 cctgagagcc ccaggagaca tcggctagag tgaccatggc tatgctcccg tctggaagat
1261 gccagcatct ggcctcccac tgttttcagc tgtgtccccc agtccgtgtc tttttagaat
1321 gtgaatgatg ataaagttgt gaaataaagg tttctatcta gtttgtaaaa aaaaaaaaaa
1381 aaaa
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