LOCUS BC014040 1298 bp mRNA linear HUM 12-FEB-2004
DEFINITION Homo sapiens leucine rich repeat and fibronectin type III domain
containing 4, mRNA (cDNA clone IMAGE:4546925), partial cds.
ACCESSION BC014040
VERSION BC014040.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1298)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1298)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (10-SEP-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 19, 2003 this sequence version replaced BC014040.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 28 Row: p Column: 17.
FEATURES Location/Qualifiers
source 1..1298
/db_xref="H-InvDB:HIT000036485"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4546925"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_15"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1298
/gene="LRFN4"
/gene_synonym="MGC3103"
/db_xref="GeneID:78999"
CDS <1..992
/gene="LRFN4"
/gene_synonym="MGC3103"
/codon_start=3
/product="LRFN4 protein"
/protein_id="AAH14040.2"
/db_xref="GeneID:78999"
/translation="DPAPTMHWVGPDDRLVGNSSRARAFPNGTLEIGVTGAGDAGGYT
CIATNPAGEATARVELRVLALPHGGNSSAEGGRPGPSDIAASARTAAEGEGTLESEPA
VQVTEVTATSGLVSWGPGRPADPVWMFQIQYNSSEDETLIYRIVPASSHHFLLKHLVP
GADYDLCLLALSPAAGPSDLTATRLLGCAHFSTLPASPLCHALQAHVLGGTLTVAVGG
VLVAALLVFTVALLVRGRGAGNGRLPLKLSHVQSQTNGGPSPTPKAHPPRSPPPRPQR
SCSLDLGDAGCYGYARRLGGAWARRSHSVHGGLLGAGCRGVGGSAERLEESVV"
misc_feature 3..185
/gene="LRFN4"
/gene_synonym="MGC3103"
/note="IGcam; Region: Immunoglobulin domain cell adhesion
molecule (cam) subfamily"
/db_xref="CDD:cd00931"
misc_feature 309..518
/gene="LRFN4"
/gene_synonym="MGC3103"
/note="fn3; Region: Fibronectin type III domain"
/db_xref="CDD:pfam00041"
BASE COUNT 213 a 429 c 432 g 224 t
ORIGIN
1 gtgaccccgc gcctaccatg cactgggtcg gtcctgacga ccggttggtt ggcaactcct
61 cccgagcccg ggctttcccc aacgggacct tagagattgg ggtgaccggc gctggggacg
121 ctgggggcta cacctgcatc gccaccaacc ctgctggtga ggccacagcc cgagtagaac
181 tgcgggtgct ggccttgccc catggtggga acagcagtgc cgaggggggc cgccccgggc
241 cctcggacat cgccgcctcc gctcgcactg ctgccgaggg tgaggggacg ctggagtctg
301 agccagccgt gcaggtgacg gaggtgaccg ccacctcagg gctggtgagc tggggtcccg
361 ggcggccagc cgacccagtg tggatgttcc aaatccagta caacagcagc gaagatgaga
421 ccctcatcta ccggattgtc ccagcctcca gccaccactt cctgctgaag cacctcgtcc
481 ccggcgctga ctatgacctc tgcctgctgg ccttgtcacc ggccgctggg ccctctgacc
541 tcacggccac caggctgctg ggctgtgccc atttctccac gctgccggcc tcgcccctgt
601 gccacgccct gcaggcccac gtgctgggcg ggaccctgac cgtggccgtg gggggtgtgc
661 tggtggctgc cttactggtc ttcactgtgg ccttgctggt tcggggccgg ggggccggaa
721 atggccgcct ccccctcaag ctcagccacg tccagtccca gaccaatgga ggccccagcc
781 ccacacccaa ggcccacccg ccgcggagcc ccccgccccg gccgcagcgc agctgctctc
841 tggacctggg agatgccggg tgctacggtt atgccaggcg cctgggagga gcttgggccc
901 gacggagcca ctctgtgcat ggggggctgc tcggggcagg gtgccggggg gtaggaggca
961 gcgccgagcg gctggaagag agtgtggtgt gatggacggg cagcttcctg tgtgctccaa
1021 gggatgagcc tcgtggggca gagggcccgg ggccgccgcc tggcctggga gtccctccct
1081 ggtttttatt ctcagtacct caggctcccc tgtgtacttg gaggggcagg gagccctttc
1141 ctcggttctg gcctccagac cagggtaagg gcaggcccct ccaacaggtg ctcacagcca
1201 ccgaggcagg ggctgcagcc acccactggg agtcttgttt ttatttataa taaaattgtt
1261 ggggacacct caaaaaaaaa aaaaaaaaaa aaaaaaaa
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