LOCUS BC013971 2618 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens homeobox A10, mRNA (cDNA clone MGC:12859
IMAGE:4107013), complete cds.
ACCESSION BC013971
VERSION BC013971.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2618)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2618)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (10-SEP-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 9, 2003 this sequence version replaced BC013971.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 17 Row: c Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 24497548.
FEATURES Location/Qualifiers
source 1..2618
/db_xref="H-InvDB:HIT000036436"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12859 IMAGE:4107013"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2618
/gene="HOXA10"
/gene_synonym="HOX1.8"
/gene_synonym="MGC12859"
/gene_synonym="PL"
/db_xref="GeneID:3206"
/db_xref="HGNC:HGNC:5100"
/db_xref="MIM:142957"
CDS 50..1231
/gene="HOXA10"
/gene_synonym="HOX1.8"
/gene_synonym="MGC12859"
/gene_synonym="PL"
/codon_start=1
/product="homeobox A10"
/protein_id="AAH13971.1"
/db_xref="GeneID:3206"
/db_xref="HGNC:HGNC:5100"
/db_xref="MIM:142957"
/translation="MSCSESPAANSFLVDSLISSGRGEAGGGGGGAGGGGGGGYYAHG
GVYLPPAADLPYGLQSCGLFPTLGGKRNEAASPGSGGGGGGLGPGAHGYGPSPIDLWL
DAPRSCRMEPPDGPPPPPQQQPPPPPQPPQPAPQATSCSFAQNIKEESSYCLYDSADK
CPKVSATAAELAPFPRGPPPDGCALGTSSGVPVPGYFRLSQAYGTAKGYGSGGGGAQQ
LGAGPFPAQPPGRGFDLPPALASGSADAARKERALDSPPPPTLACGSGGGSQGDEEAH
ASSSAAEELSPAPSESSKASPEKDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLEL
EKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRENRIRELTANFNF
S"
BASE COUNT 625 a 690 c 688 g 615 t
ORIGIN
1 gtcagccaga aagggctatc tgctcccttc gccaaattat cccacaacaa tgtcatgctc
61 ggagagcccc gccgcgaact cttttttggt cgactcgctc atcagctcgg gcagaggcga
121 ggcaggcggc ggtggtggtg gcgcgggggg cggcggcggt ggcggttact acgcccacgg
181 cggggtctac ctgccgcccg ccgccgacct gccctacggg ctgcagagct gcgggctctt
241 ccccacgctg ggcggcaagc gcaatgaggc agcgtcgccg ggcagcggtg gcggtggcgg
301 gggtctaggt cccggggcgc acggctacgg gccctcgccc atagacctgt ggctagacgc
361 gccccggtct tgccggatgg agccgcctga cgggccgccg ccgccgcccc agcagcagcc
421 gccgcccccg ccgcaaccac cccagccagc gccgcaggcc acctcgtgct ctttcgcgca
481 gaacatcaaa gaagagagct cctactgcct ctacgactcg gcggacaaat gccccaaagt
541 ctcggccacc gccgccgaac tggctccctt cccgcggggc ccgccgcccg acggctgcgc
601 cctgggcacc tccagcgggg tgccagtgcc tggctacttc cgcctttctc aggcctacgg
661 caccgccaag ggctatggca gcggcggcgg cggcgcgcag caactcgggg ctggcccgtt
721 ccccgcgcag cccccggggc gcggtttcga tctcccgccc gcgctagcct ccggctcggc
781 cgatgcggcc cggaaggagc gagccctcga ttcgccgccg ccccccacgc tggcttgcgg
841 cagcggcggg ggctcgcagg gcgacgagga ggcgcacgcg tcgtcctcgg ccgcggagga
901 gctctccccg gccccttccg agagcagcaa agcctcgccg gagaaggatt ccctgggcaa
961 ttccaaaggt gaaaacgcag ccaactggct cacggcaaag agtggtcgga agaagcgctg
1021 cccctacacg aagcaccaga cactggagct ggagaaggag tttctgttca atatgtacct
1081 tactcgagag cggcgcctag agattagccg cagcgtccac ctcacggaca gacaagtgaa
1141 aatctggttt cagaaccgca ggatgaaact gaagaaaatg aatcgagaaa accggatccg
1201 ggagctcaca gccaacttta atttttcctg atgaatctcc aggcgacgcg gttttttcac
1261 ttcccgagcg ctggtcccct ccctctgtct tcaggctctg cccaggaact cgcacctgtg
1321 ctggagccct gttcctccct cccacactcg ccatctcctg ggccgttaca tctgtgcagg
1381 gctggtttgt tctgactttt tgtttctttg tgtttgcttg gtgctggttt atttgttgtt
1441 ttctggggga aaaagccata tcatgctaaa attctataga gatagatatt gtcctaagtg
1501 tcaagtcctg actgggctgg gtttgctgtc ttggggtccc actgctcgaa atggcccctg
1561 tcttcggccg agctggtttc ctgcccagcc tggggcaaac ctagccggaa ggccgaggtc
1621 ccattgttgg cgctgaggtg tctggcctga ggtcaatggt gcaaaggagc cgccaccggg
1681 catgtctgcc tggagtgctg tgctgtgttt aatcagggga tacaggcccc tgggtttctt
1741 ttttctttct tcctttcttc cttggccaag agaagggctt acaggcatgg acatgcaggt
1801 tggcaaacgg gcttgacttt ggctgattta aaaagtgaga aagaaagtaa aaaaggttaa
1861 tttttccttc ctctgtaaga tatcccagct ttaaaaagaa aaaaaaagaa ttaccaagag
1921 aaggggactt ctcttccagt ttctgtaagg tcttacattg cctgactaaa atgtttcatt
1981 tacctctaaa tttccatatc cttctggctg tagataaata atgtagtttt gtttatgcat
2041 ttggaattag tggatttttt tgtcattaaa attgttacca ctggtaacat gtgacaagca
2101 caccacaatt ctccctatct tgtgaagttg tttttttaaa tcgccttgaa caaaaagttt
2161 ttttttttgt ttgtttttgc tttctgaaat tcacagaagc ctaggaggac tggggtaagc
2221 ggaataaact agagaaggga gacattgttt ggatttcctt tatactgtga agttacatgc
2281 ataaaagggt caaacctgta gatgcagaaa aagaaaaaaa cctataaata caaatctgta
2341 taaatgtcta ttattatgaa gaattgccaa tcttgtttta agcaaatgca ttctatcgtt
2401 attataaatg ttagttctag ctctatttac ttctaatctt aaatcagaat aaattaatat
2461 tgtattgctg ctgtgcgtgg aaaaagacga tgtttatgtt cttatagaat aaaagctgtg
2521 gaatgaagct ttttaatttt aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2581 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaa
//