LOCUS BC013910 2011 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens death effector domain containing, mRNA (cDNA clone
MGC:2003 IMAGE:3504847), complete cds.
ACCESSION BC013910
VERSION BC013910.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2011)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2011)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-SEP-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC013910.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 7 Row: a Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 14670395.
FEATURES Location/Qualifiers
source 1..2011
/db_xref="H-InvDB:HIT000036400"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:2003 IMAGE:3504847"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2011
/gene="DEDD"
/gene_synonym="CASP8IP1"
/gene_synonym="DEDD1"
/gene_synonym="DEFT"
/gene_synonym="FLDED1"
/gene_synonym="KE05"
/db_xref="GeneID:9191"
/db_xref="HGNC:HGNC:2755"
/db_xref="MIM:606841"
CDS 216..1172
/gene="DEDD"
/gene_synonym="CASP8IP1"
/gene_synonym="DEDD1"
/gene_synonym="DEFT"
/gene_synonym="FLDED1"
/gene_synonym="KE05"
/codon_start=1
/product="death effector domain containing"
/protein_id="AAH13910.1"
/db_xref="GeneID:9191"
/db_xref="HGNC:HGNC:2755"
/db_xref="MIM:606841"
/translation="MAGLKRRASQVWPEEHGEQEHGLYSLHRMFDIVGTHLTHRDVRV
LSFLFVDVIDDHERGLIRNGRDFLLALERQGRCDESNFRQVLQLLRIITRHDLLPYVT
LKRRRAVCPDLVDKYLEETSIRYVTPRALSDPEPRPPQPSKTVPPHYPVVCCPTSGPQ
MCSKRPARGRATLGSQRKRRKSVTPDPKEKQTCDIRLRVRAEYCQHETALQGNVFSNK
QDPLERQFERFNQANTILKSRDLGSIICDIKFSELTYLDAFWRDYINGSLLEALKGVF
ITDSLKQAVGHEAIKLLVNVDEEDYELGRQKLLRNLMLQALP"
BASE COUNT 492 a 531 c 505 g 483 t
ORIGIN
1 cacggccgcg gcggcggcgg cggcggcggc tgctggagcc cggatgcggc gccgtgaggc
61 aggcccggga gagcggcgcg gatggatcca acatggcggc gccgagcctg agccgagaga
121 agagacctgg gaaattaagt ttcttgcgga gtacggtggg gattgcagct gctgagcagg
181 gattctggaa agcattgcgt acctgagccc ccagcatggc gggcctaaag cggcgggcaa
241 gccaggtgtg gccagaagag catggtgagc aggaacatgg gctgtacagc ctgcaccgca
301 tgtttgacat cgtgggcact catctgacac acagagatgt gcgcgtgctt tctttcctct
361 ttgttgatgt cattgatgac cacgagcgtg gactcatccg aaatggacgt gacttcttat
421 tggcactgga gcgccagggc cgctgtgatg aaagtaactt tcgccaggtg ctgcagctgc
481 tgcgcatcat cactcgccac gacctgctgc cctacgtcac cctcaagagg agacgggctg
541 tgtgccctga tcttgtagac aagtatctgg aggagacatc aattcgctat gtgaccccca
601 gagccctcag tgatccagaa ccaaggcctc cccagccctc taaaacagtg cctccccact
661 atcctgtggt gtgttgcccc acttcgggtc ctcagatgtg tagcaagcgg ccagcccgag
721 ggagagccac acttgggagc cagcgaaaac gccggaagtc agtgacacca gatcccaagg
781 agaagcagac atgtgacatc agactgcggg ttcgggctga atactgccag catgagactg
841 ctctgcaggg caatgtcttc tctaacaagc aggacccact tgagcgccag tttgagcgct
901 ttaaccaggc caacaccatc ctcaagtccc gggacctggg ctccatcatc tgtgacatca
961 agttctctga gctcacctac ctcgatgcat tctggcgtga ctacatcaat ggctctttat
1021 tagaggcact taaaggtgtc ttcatcacag actccctcaa gcaagctgtg ggccatgaag
1081 ccatcaagct gctggtaaat gtagacgagg aggactatga gctgggccga cagaaactcc
1141 tgaggaactt gatgctgcaa gcattgccct gacctattcc ctcttctcac tttggggact
1201 gttcccatca cccacctctg gagcttacac tgttctgggg tttgttctct acccttccaa
1261 ccaatcacac ccctgccttt tttttttttt ttttaaagaa aaagacaaaa gaaagtggaa
1321 gtggtattcc ccacccctcc ctgcacccat gtgcctgggc ttccccttta tttccctttt
1381 ccatttaccc cgtaatgtgt ctctacagct accttaccac tgagccgtaa gacaaatgta
1441 taggaagaag caaagtctac agcacatagt ctttgtaagg gattgatgtg aacacttttt
1501 tttggatgca ctaaggagtt atcaatactt ctggctttat gagagctctt aaattttgtc
1561 taaaaaacca aagggctgtg agtaagggag ctatgtggaa agtgggactc tgaagtgtat
1621 tttgaaaatt aatcgccacc ctcttccaaa ttatagaatt ttttaaaaac aagctgtggc
1681 cctttccact ctctcctggc ctctggtgct gctcctctct gccgcctttc ctccattcca
1741 tggcttgaaa cctctgcctg atgtggctcc ttcctttttc ccatttgtca aaccctcttc
1801 aaaggaggaa cagataagac tgggtcagcc tagtcatgcc tcccaactgt ggtggtatat
1861 gtgtacacac atacacaggg tggatggaga agaggttgct gattaaaata cactccccct
1921 ataaagggga agggggagtg tgacactttc tttccatgtt caagtgaaaa taaataatgt
1981 accctgcaaa aaaaaaaaaa aaaaaaaaaa a
//