LOCUS BC013875 2048 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens matrix metallopeptidase 1 (interstitial collagenase),
mRNA (cDNA clone MGC:10479 IMAGE:3834572), complete cds.
ACCESSION BC013875
VERSION BC013875.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2048)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2048)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-SEP-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Nov 6, 2003 this sequence version replaced BC013875.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 14 Row: h Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13027798.
FEATURES Location/Qualifiers
source 1..2048
/db_xref="H-InvDB:HIT000036382"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:10479 IMAGE:3834572"
/tissue_type="Ovary, adenocarcinoma"
/clone_lib="NIH_MGC_9"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2048
/gene="MMP1"
/gene_synonym="CLGN"
/db_xref="GeneID:4312"
/db_xref="HGNC:HGNC:7155"
/db_xref="MIM:120353"
CDS 43..1452
/gene="MMP1"
/gene_synonym="CLGN"
/codon_start=1
/product="matrix metallopeptidase 1 (interstitial
collagenase)"
/protein_id="AAH13875.1"
/db_xref="GeneID:4312"
/db_xref="HGNC:HGNC:7155"
/db_xref="MIM:120353"
/translation="MHSFPPLLLLLFWGVVSHSFPATLETQEQDVDLVQKYLEKYYNL
KNDGRQVEKRRNSGPVVEKLKQMQEFFGLKVTGKPDAETLKVMKQPRCGVPDVAQFVL
TEGNPRWEQTHLTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIM
ISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFREYNLHRVAAH
ELGHSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIYGRSQNPVQPIGPQTPK
ACDSKLTFDAITTIRGEVMFFKDRFYMRTNPFYPEVELNFISVFWPQLPNGLEAAYEF
ADRDEVRFFKGNKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFF
VANKYWRYDEYKRSMDPGYPKMIAHDFPGIGHKVDAVFMKDGFFYFFHGTRQYKFDPK
TKRILTLQKANSWFNCRKN"
BASE COUNT 678 a 408 c 434 g 528 t
ORIGIN
1 gccatcactt accttgcact gagaaagaag acaaaggcca gtatgcacag ctttcctcca
61 ctgctgctgc tgctgttctg gggtgtggtg tctcacagct tcccagcgac tctagaaaca
121 caagagcaag atgtggactt agtccagaaa tacctggaaa aatactacaa cctgaagaat
181 gatgggaggc aagttgaaaa gcggagaaat agtggcccag tggttgaaaa attgaagcaa
241 atgcaggaat tctttgggct gaaagtgact gggaaaccag atgctgaaac cctgaaggtg
301 atgaagcagc ccagatgtgg agtgcctgat gtggctcagt ttgtcctcac tgaggggaac
361 cctcgctggg agcaaacaca tctgacctac aggattgaaa attacacgcc agatttgcca
421 agagcagatg tggaccatgc cattgagaaa gccttccaac tctggagtaa tgtcacacct
481 ctgacattca ccaaggtctc tgagggtcaa gcagacatca tgatatcttt tgtcagggga
541 gatcatcggg acaactctcc ttttgatgga cctggaggaa atcttgctca tgcttttcaa
601 ccaggcccag gtattggagg ggatgctcat tttgatgaag atgaaaggtg gaccaacaat
661 ttcagagagt acaacttaca tcgtgttgcg gctcatgaac tcggccattc tcttggactc
721 tcccattcta ctgatatcgg ggctttgatg taccctagct acaccttcag tggtgatgtt
781 cagctagctc aggatgacat tgatggcatc caagccatat atggacgttc ccaaaatcct
841 gtccagccca tcggcccaca aaccccaaaa gcgtgtgaca gtaagctaac ctttgatgct
901 ataactacga ttcggggaga agtgatgttc tttaaagaca gattctacat gcgcacaaat
961 cccttctacc cggaagttga gctcaatttc atttctgttt tctggccaca actgccaaat
1021 gggcttgaag ctgcttacga atttgccgac agagatgaag tccggttttt caaagggaat
1081 aagtactggg ctgttcaggg acagaatgtg ctacacggat accccaagga catctacagc
1141 tcctttggct tccctagaac tgtgaagcat atcgatgctg ctctttctga ggaaaacact
1201 ggaaaaacct acttctttgt tgctaacaaa tactggaggt atgatgaata taaacgatct
1261 atggatccag gttatcccaa aatgatagca catgactttc ctggaattgg ccacaaagtt
1321 gatgcagttt tcatgaaaga tggatttttc tatttctttc atggaacaag acaatacaaa
1381 tttgatccta aaacgaagag aattttgact ctccagaaag ctaatagctg gttcaactgc
1441 aggaaaaatt gaacattact aatttgaatg gaaaacacat ggtgtgagtc caaagaaggt
1501 gttttcctga agaattgtct attttctcag tcatttttaa cctctagagt cactgataca
1561 cagaatataa tcttatttat acctcagttt gcatattttt ttactattta gaatgtagcc
1621 ctttttgtac tgatataatt tagttccaca aatggtgggt acaaaaagtc aagtttgtgg
1681 cttatggatt catataggcc agagttgcaa agatcttttc cagagtatgc aactctgacg
1741 ttgatcccag agagcagctt cagtgacaaa catatccttt caagacagaa agagacagga
1801 gacatgagtc tttgccggag gaaaagcagc tcaagaacac atgtgcagtc actggtgtca
1861 ccctggatag gcaagggata actcttctaa cacaaaataa gtgttttatg tttggaataa
1921 agtcaacctt gtttctactg ttttatacaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1981 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2041 aaaaaaaa
//