LOCUS BC013868 2502 bp mRNA linear HUM 04-NOV-2003 DEFINITION Homo sapiens potassium channel tetramerisation domain containing 3, mRNA (cDNA clone IMAGE:3842456), partial cds. ACCESSION BC013868 VERSION BC013868.2 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2502) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2502) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (07-SEP-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 19, 2003 this sequence version replaced BC013868.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 14 Row: c Column: 14 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 27545449. FEATURES Location/Qualifiers source 1..2502 /db_xref="H-InvDB:HIT000088214" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:3842456" /tissue_type="Placenta, choriocarcinoma" /clone_lib="NIH_MGC_21" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..>2502 /gene="KCTD3" /gene_synonym="NY-REN-45" /db_xref="GeneID:51133" CDS 295..>2502 /gene="KCTD3" /gene_synonym="NY-REN-45" /codon_start=1 /product="KCTD3 protein" /protein_id="AAH13868.1" /db_xref="GeneID:51133" /translation="MAGGHCGSVPAAAAGSGEIVQLNVGGTRFSTSRQTLMWIPDSFF SSLLSGRISTLRDETGAIFIDRDPAAFAPILNFLRTKELDLRGVSINVLRHEAEFYGI TPLVRRLLLCEELERSSCGSVLFHGYLPPPGIPSRKINNTVRSADSRNGLNSTEGEAR GNGTQPVLSGTGEETVRLGFPVDPRKVLIVAGHHNWIVAAYAHFAVCYRIKESSGWQQ VFTSPYLDWTIERVALNAKVVGGPHGDKDKMVAVASESSIILWSVQDGGSGSEIGVFS LGVPVDALFFIGNQLVATSHTGKVGVWNAVTQHWQVQDVVPITSYDTAGSFLLLGCNN GSIYYIDMQKFPLRMKDNDLLVTELYHDPSNDAITALSVYLTPKTSVSGNWIEIAYGT SSGAVRVIVQHPETVGSGPQLFQTFTVHRSPVTKIMLSEKHLVSVCADNNHVRTWTVT RFRGMISTQPGSTPLASFKILSLEETESHGSYSSGNDIGPFGERDDQQVFIQKVVPIT NKLFVRLSSTGKRICEIQAVDCTTISSFTVRECEGSSRMGSRPRRYLFTGHTNGSIQM WDLTTAMDMVNKSEDKDVGGPTEEELLKLLDQCDLSTSRCATPNISPATSVVQHSHLR ESNSSLQLQHHDTTHEAATYGSMRPYRESPLLARARRTESFHSYRDFQTINLNRNVER AVPENGNLGPIQAEVKGATGECNISERKSPGVEIKKKKKKKKKKKKKKKKKKKK" misc_feature 349..612 /gene="KCTD3" /gene_synonym="NY-REN-45" /note="K_tetra; Region: K+ channel tetramerisation domain. The N-terminal, cytoplasmic tetramerisation domain (T1) of voltage-gated K+ channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels. It is distantly related to the BTB/POZ domain pfam00651" /db_xref="CDD:pfam02214" BASE COUNT 717 a 540 c 651 g 594 t ORIGIN 1 gtcggtggca gcggagcacg gagaagaggc ccgggcggcc cggcggcctg gaggccgcga 61 aaggtggagg ccgggccgcc cttgtgcacc gcaggattga cccgggaagg ggcagaagct 121 agcgagcccc gcccggccgc cgggaaggtg ggggaagccc cgtgcacccc ccgccctccg 181 gccgccgccg ccccgctggc cctgcagccg tcgccgctgc ctcgggctac agccccgggc 241 tcggcggtcc cggctgggga aggagggcgg cgagcgcgtc cggagccgcc ggagatggcg 301 ggagggcact gcggcagcgt ccccgcggcg gcggccggca gcggcgagat cgtccaactg 361 aacgtagggg ggaccagatt tagtacctca agacaaactc ttatgtggat tccagattct 421 tttttttcca gtttgctgag tgggagaatt tcaacacttc gagatgaaac tggtgctata 481 tttattgata gagatccagc agcatttgca cccattttaa attttcttcg gacaaaagaa 541 ctagacttaa ggggagtgag tattaatgtt ctcaggcatg aagcagaatt ttacgggatc 601 actccattag taagaaggct tctcttatgt gaagaattgg agcgttcctc ttgtggcagt 661 gtcctttttc atggttactt gcccccacca ggtattccta gtcgtaaaat aaacaacaca 721 gtcagatctg ctgattctag gaatggtcta aattctacag aaggtgaagc ccggggaaat 781 ggtacacagc ctgttctctc tggaacggga gaagaaactg ttaggctagg atttcctgtg 841 gatccacgaa aggtgctaat agtagctggc catcacaact ggattgtagc tgcatatgcc 901 cattttgctg tgtgttacag aatcaaagaa tcttcaggat ggcagcaagt gtttacgagc 961 ccatatttgg attggactat cgaacgagta gctttaaatg caaaggtggt tggagggcca 1021 catggagaca aagacaaaat ggttgctgtt gcctcagaga gtagcatcat cttgtggagt 1081 gttcaggatg ggggaagtgg aagtgaaatt ggagtgttca gcctgggtgt tcctgtagat 1141 gctctcttct ttattggtaa ccagttggtg gccacgagtc atacagggaa agtgggagtg 1201 tggaatgctg tcactcagca ctggcaggtt caagatgttg ttcctataac tagttatgac 1261 actgctggat cattccttct gcttggatgt aacaatggat caatatatta catagatatg 1321 cagaagttcc ccttgcgaat gaaagataat gatcttcttg taactgaact gtatcatgat 1381 ccttcaaatg atgctattac tgctctgagt gtttacctca cacccaaaac aagtgtcagt 1441 ggtaactgga tcgagatcgc ctatggtacg agctctggag cagtacgagt gattgtacaa 1501 cacccagaga cagttgggtc aggtcctcag ctttttcaga ctttcacagt tcaccgaagt 1561 cccgtaacaa aaatcatgct atcagagaag catcttgtat cagtctgtgc agataataat 1621 catgtccgga cgtggacagt aacacgattc agaggaatga tctctactca gccaggttct 1681 actcctttag cgtcattcaa gatactatcc ctggaggaga cagaaagtca tggtagctat 1741 tcctctggaa atgacatagg accttttgga gagcgagacg atcaacaggt gtttatccag 1801 aaagttgttc ccatcaccaa caaactattt gtaagactct catcgactgg aaaaagaata 1861 tgtgagatcc aggctgttga ctgtactaca atatcctcat ttacagtgag ggaatgtgag 1921 ggatccagta ggatgggctc aagaccaagg cgctacttgt tcacaggcca tacaaatggc 1981 agtattcaaa tgtgggatct gaccactgct atggatatgg ttaacaaaag tgaagataag 2041 gatgtaggtg gtccaaccga agaagagcta ctcaaattac tcgatcaatg tgatttgagc 2101 acatctcgct gtgctactcc taacatcagt ccagcaactt ccgtagttca gcatagccac 2161 ttacgagaat caaattctag ccttcagctt cagcaccatg ataccaccca tgaagcagct 2221 acttacggtt ccatgaggcc ttacagagaa agtcctttat tagcaagggc aagaaggact 2281 gagagctttc acagttatag ggacttccag actattaatt tgaacagaaa tgtagaaaga 2341 gctgtccctg aaaatggtaa cttgggtcca atacaagctg aagtgaaagg ggcaacaggg 2401 gaatgtaata tatctgagag aaagtctcct ggagtagaaa taaaaaaaaa aaaaaaaaaa 2461 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa //