LOCUS BC013808 1893 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa, mRNA (cDNA clone MGC:17061 IMAGE:3918866), complete cds. ACCESSION BC013808 VERSION BC013808.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1893) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1893) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (04-SEP-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC/DCTD/DTP cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 26 Row: b Column: 5 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 21536363. FEATURES Location/Qualifiers source 1..1893 /db_xref="H-InvDB:HIT000036374" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:17061 IMAGE:3918866" /tissue_type="Skin, melanotic melanoma." /clone_lib="NIH_MGC_72" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1893 /gene="TAF1A" /gene_synonym="MGC:17061" /gene_synonym="RAFI48" /gene_synonym="SL1" /gene_synonym="TAFI48" /db_xref="GeneID:9015" /db_xref="HGNC:HGNC:11532" /db_xref="MIM:604903" CDS 190..1542 /gene="TAF1A" /gene_synonym="MGC:17061" /gene_synonym="RAFI48" /gene_synonym="SL1" /gene_synonym="TAFI48" /codon_start=1 /product="TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa" /protein_id="AAH13808.1" /db_xref="GeneID:9015" /db_xref="HGNC:HGNC:11532" /db_xref="MIM:604903" /translation="MSDFSEELKGPVTDDEEVETSVLSGAGMHFPWLQTYVETVAIGG KRRKDFAQTTSACLSFIQEALLKHQWQQAAEYMYSYFQTLEDSDSYKRQAAPEIIWKL GSEILFYHPKSNMESFNTFANRMKNIGVMNYLKISLQHALYLLHHGMLKDAKRNLSEA ETWRHGENTSSREILINLIQAYKGLLQYYTWSEKKMELSKLDKDDYAYNAVAQDVFNH SWKTSANISALIKIPGVWDPFVKSYVEMLEFYGDRDGAQEVLTNYAYDEKFPSNPNAH IYLYNFLKRQKAPRSKLISVLKILYQIVPSHKLMLEFHTLLRKSEKEEHRKLGLEVLF GVLDFAGCTKNITAWKYLAKYLKNILMGNHLAWVQEEWNSRKNWWPGFHFSYFWAKSD WKEDTALACEKAFVAGLLLGKGCRYFRYILKQDHQILGKKIKRMKRSVKKYSIVNPRL " BASE COUNT 615 a 304 c 407 g 567 t ORIGIN 1 gccaacaata cgcctgctgc cgcaggagga gttacgagcc cggccgcgcg ctgcctaaat 61 acctaaacca ggtttagcgc ctgctcatat aaagctctcc taactcgtct tccggtggga 121 atttcttcac gtgggccgga gtcggagact gagtttagct ttactgagga gctctaaatt 181 taggcgggta tgagtgattt cagtgaagaa ttaaaagggc ctgtgacaga tgatgaagaa 241 gtggaaacat ctgtgctcag tggtgcagga atgcattttc cttggcttca aacatacgta 301 gaaactgtgg ccattggagg gaaaaggagg aaggattttg ctcagacaac aagtgcttgt 361 ttaagtttta tccaagaagc tctgctgaag caccaatggc agcaagctgc agaatacatg 421 tacagttatt ttcagacctt ggaagattca gatagctaca aaaggcaggc tgcacctgag 481 attatttgga agctcggaag tgaaattcta ttttatcatc ccaaaagcaa catggagagt 541 ttcaatactt ttgctaaccg gatgaaaaat attggcgtca tgaattattt aaagatctcc 601 ttacaacatg cattatacct tctgcatcat ggaatgctta aagatgctaa gagaaatctg 661 agtgaggcag agacatggag acatggtgaa aatacgtctt cccgggaaat attaatcaac 721 cttattcagg cctataaagg gcttttacag tattatacct ggtctgaaaa gaagatggaa 781 ttgtcaaagc ttgataagga tgattatgct tacaatgcag tagcccagga tgtgttcaac 841 cacagctgga agacatctgc aaatatttct gcattgatta aaattcctgg agtttgggac 901 ccttttgtga agagttatgt agaaatgctg gaattctatg gggatcgaga tggagcccaa 961 gaggtactca ccaattatgc atatgatgaa aagtttccat caaatccaaa tgcccatatc 1021 tacttataca actttctaaa gagacagaag gcaccaagat caaaattgat aagtgtgctt 1081 aagattttgt atcagattgt accatctcat aaattgatgt tggaattcca tacattactt 1141 agaaaatcag aaaaagaaga acaccgtaaa ctggggttgg aggtattatt tggagtctta 1201 gattttgccg gatgcactaa gaatataact gcttggaaat acttggcaaa atatctgaaa 1261 aatatcttaa tgggaaacca ccttgcgtgg gttcaagaag agtggaactc caggaaaaac 1321 tggtggccag ggtttcattt cagctacttt tgggcaaaaa gtgattggaa ggaagataca 1381 gctttggcct gtgagaaagc ttttgtggct ggtttactgt taggaaaagg ttgtagatat 1441 ttccggtata ttttaaagca agatcaccaa atcttaggga agaaaattaa gcggatgaag 1501 agatctgtga aaaaatacag tattgtaaat ccaagactct gatactgaat tttagttatt 1561 tcacagttgt agctacacag taagtagctt ggtagatagt tattgaatgt atttatgtag 1621 tgtattaaga agcttatatt actacaaaaa acttattttt atatattttt atatttttgt 1681 attatttata gctagagaaa caatattact gcctttgctc tttgtaacta tgtctgtttt 1741 cttttttgta atgttaaatg ttacatttgt taaggaataa ttcttcaaat gacaaactaa 1801 ttacagaata tagctctaca gcagttattg tttgcaaata ctttgcctct tgctattgtg 1861 taataaactg taacttgtaa aaaaaaaaaa aaa //