LOCUS BC013808 1893 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens TATA box binding protein (TBP)-associated factor, RNA
polymerase I, A, 48kDa, mRNA (cDNA clone MGC:17061 IMAGE:3918866),
complete cds.
ACCESSION BC013808
VERSION BC013808.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1893)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1893)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-SEP-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 26 Row: b Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21536363.
FEATURES Location/Qualifiers
source 1..1893
/db_xref="H-InvDB:HIT000036374"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17061 IMAGE:3918866"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1893
/gene="TAF1A"
/gene_synonym="MGC:17061"
/gene_synonym="RAFI48"
/gene_synonym="SL1"
/gene_synonym="TAFI48"
/db_xref="GeneID:9015"
/db_xref="HGNC:HGNC:11532"
/db_xref="MIM:604903"
CDS 190..1542
/gene="TAF1A"
/gene_synonym="MGC:17061"
/gene_synonym="RAFI48"
/gene_synonym="SL1"
/gene_synonym="TAFI48"
/codon_start=1
/product="TATA box binding protein (TBP)-associated
factor, RNA polymerase I, A, 48kDa"
/protein_id="AAH13808.1"
/db_xref="GeneID:9015"
/db_xref="HGNC:HGNC:11532"
/db_xref="MIM:604903"
/translation="MSDFSEELKGPVTDDEEVETSVLSGAGMHFPWLQTYVETVAIGG
KRRKDFAQTTSACLSFIQEALLKHQWQQAAEYMYSYFQTLEDSDSYKRQAAPEIIWKL
GSEILFYHPKSNMESFNTFANRMKNIGVMNYLKISLQHALYLLHHGMLKDAKRNLSEA
ETWRHGENTSSREILINLIQAYKGLLQYYTWSEKKMELSKLDKDDYAYNAVAQDVFNH
SWKTSANISALIKIPGVWDPFVKSYVEMLEFYGDRDGAQEVLTNYAYDEKFPSNPNAH
IYLYNFLKRQKAPRSKLISVLKILYQIVPSHKLMLEFHTLLRKSEKEEHRKLGLEVLF
GVLDFAGCTKNITAWKYLAKYLKNILMGNHLAWVQEEWNSRKNWWPGFHFSYFWAKSD
WKEDTALACEKAFVAGLLLGKGCRYFRYILKQDHQILGKKIKRMKRSVKKYSIVNPRL
"
BASE COUNT 615 a 304 c 407 g 567 t
ORIGIN
1 gccaacaata cgcctgctgc cgcaggagga gttacgagcc cggccgcgcg ctgcctaaat
61 acctaaacca ggtttagcgc ctgctcatat aaagctctcc taactcgtct tccggtggga
121 atttcttcac gtgggccgga gtcggagact gagtttagct ttactgagga gctctaaatt
181 taggcgggta tgagtgattt cagtgaagaa ttaaaagggc ctgtgacaga tgatgaagaa
241 gtggaaacat ctgtgctcag tggtgcagga atgcattttc cttggcttca aacatacgta
301 gaaactgtgg ccattggagg gaaaaggagg aaggattttg ctcagacaac aagtgcttgt
361 ttaagtttta tccaagaagc tctgctgaag caccaatggc agcaagctgc agaatacatg
421 tacagttatt ttcagacctt ggaagattca gatagctaca aaaggcaggc tgcacctgag
481 attatttgga agctcggaag tgaaattcta ttttatcatc ccaaaagcaa catggagagt
541 ttcaatactt ttgctaaccg gatgaaaaat attggcgtca tgaattattt aaagatctcc
601 ttacaacatg cattatacct tctgcatcat ggaatgctta aagatgctaa gagaaatctg
661 agtgaggcag agacatggag acatggtgaa aatacgtctt cccgggaaat attaatcaac
721 cttattcagg cctataaagg gcttttacag tattatacct ggtctgaaaa gaagatggaa
781 ttgtcaaagc ttgataagga tgattatgct tacaatgcag tagcccagga tgtgttcaac
841 cacagctgga agacatctgc aaatatttct gcattgatta aaattcctgg agtttgggac
901 ccttttgtga agagttatgt agaaatgctg gaattctatg gggatcgaga tggagcccaa
961 gaggtactca ccaattatgc atatgatgaa aagtttccat caaatccaaa tgcccatatc
1021 tacttataca actttctaaa gagacagaag gcaccaagat caaaattgat aagtgtgctt
1081 aagattttgt atcagattgt accatctcat aaattgatgt tggaattcca tacattactt
1141 agaaaatcag aaaaagaaga acaccgtaaa ctggggttgg aggtattatt tggagtctta
1201 gattttgccg gatgcactaa gaatataact gcttggaaat acttggcaaa atatctgaaa
1261 aatatcttaa tgggaaacca ccttgcgtgg gttcaagaag agtggaactc caggaaaaac
1321 tggtggccag ggtttcattt cagctacttt tgggcaaaaa gtgattggaa ggaagataca
1381 gctttggcct gtgagaaagc ttttgtggct ggtttactgt taggaaaagg ttgtagatat
1441 ttccggtata ttttaaagca agatcaccaa atcttaggga agaaaattaa gcggatgaag
1501 agatctgtga aaaaatacag tattgtaaat ccaagactct gatactgaat tttagttatt
1561 tcacagttgt agctacacag taagtagctt ggtagatagt tattgaatgt atttatgtag
1621 tgtattaaga agcttatatt actacaaaaa acttattttt atatattttt atatttttgt
1681 attatttata gctagagaaa caatattact gcctttgctc tttgtaacta tgtctgtttt
1741 cttttttgta atgttaaatg ttacatttgt taaggaataa ttcttcaaat gacaaactaa
1801 ttacagaata tagctctaca gcagttattg tttgcaaata ctttgcctct tgctattgtg
1861 taataaactg taacttgtaa aaaaaaaaaa aaa
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