LOCUS BC013581 2506 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens collagen, type VIII, alpha 1, mRNA (cDNA clone MGC:9568 IMAGE:3875911), complete cds. ACCESSION BC013581 VERSION BC013581.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2506) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2506) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (04-SEP-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP/Gazdar cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 14 Row: a Column: 8 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 32895369. FEATURES Location/Qualifiers source 1..2506 /db_xref="H-InvDB:HIT000036288" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:9568 IMAGE:3875911" /tissue_type="Lung, large cell carcinoma" /clone_lib="NIH_MGC_68" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2506 /gene="COL8A1" /gene_synonym="MGC9568" /db_xref="GeneID:1295" /db_xref="HGNC:HGNC:2215" /db_xref="MIM:120251" CDS 238..2472 /gene="COL8A1" /gene_synonym="MGC9568" /codon_start=1 /product="collagen, type VIII, alpha 1" /protein_id="AAH13581.1" /db_xref="GeneID:1295" /db_xref="HGNC:HGNC:2215" /db_xref="MIM:120251" /translation="MAVLPGPLQLLGVLLTISLSSIRLIQAGAYYGIKPLPPQIPPQM PPQIPQYQPLGQQVPHMPLAKDGLAMGKEMPHLQYGKEYPHLPQYMKEIQPAPRMGKE AVPKKGKEIPLASLRGEQGPRGEPGPRGPPGPPGLPGHGIPGIKGKPGPQGYPGVGKP GMPGMPGKPGAMGMPGAKGEIGQKGEIGPMGIPGPQGPPGPHGLPGIGKPGGPGLPGQ PGPKGDRGPKGLPGPQGLRGPKGDKGFGMPGAPGVKGPPGMHGPPGPVGLPGVGKPGV TGFPGPQGPLGKPGAPGEPGPQGPIGVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKG EQGLPGLPGPPGLPGIGKPGFPGPKGDRGMGGVPGALGPRGEKGPIGAPGIGGPPGEP GLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGEVGPPG MRGLPGPIGPKGEAGQKGVPGLPGVPGLLGPKGEPGIPGDQGLQGPPGIPGIGGPSGP IGPPGIPGPKGEPGLPGPPGFPGIGKPGVAGLHGPPGKPGALGPQGQPGLPGPPGPPG PPGPPAVMPPTPPPQGEYLPDMGLGIDGVKPPHAYGAKKGKNGGPAYEMPAFTAELTA PFPPVGAPVKFNKLLYNGRQNYNPQTGIFTCEVPGVYYFAYHVHCKGGNVWVALFKNN EPVMYTYDEYKKGFLDQASGSAVLLLRPGDRVFLQMPSEQAAGLYAGQYVHSSFSGYL LYPM" BASE COUNT 624 a 698 c 753 g 431 t ORIGIN 1 ctccgtggga gccagcgagc ctctctccct gatcttacgt gctcaaggga gctcacacgt 61 tcaccaactc acccttgaag tcatctcaag aacaaaagac aactgaaaga agctgttgtg 121 aaggcagagc agcatctgct gaagagacag aaaccagccc cagaggtgtc acaggaaggc 181 accagcaagg acattggtct ttgatttgat tcagcagtcc tgtcaagtat aaatgtgatg 241 gctgtgctgc ctggccctct gcagctgctg ggagtgctgc ttaccatttc cctgagttcc 301 atcaggctca ttcaggctgg tgcctactat gggatcaagc cgctgccacc tcaaattcct 361 cctcagatgc caccacaaat tccacaatac cagcccctgg gtcagcaagt acctcacatg 421 cctttggcca aagatggcct tgccatgggc aaggagatgc cccacttgca gtatggcaaa 481 gagtatccac acctacccca atatatgaag gaaattcaac cggcgccaag aatgggcaag 541 gaagccgtac ccaagaaagg caaagaaata ccattagcca gtttacgagg ggaacaaggt 601 ccccgtggag agcctggccc aagaggacca cctgggcccc ctggtttgcc aggtcatggg 661 atacctggaa ttaaaggaaa accagggcca cagggatatc caggagttgg aaagccaggt 721 atgcctggaa tgccagggaa gccaggagcc atgggcatgc ctggggcaaa aggagaaatt 781 ggacagaaag gggaaattgg gcctatgggg atcccaggac cacaaggacc tccagggcct 841 catggacttc ctggcattgg gaagccaggt gggccagggt taccagggca accaggacca 901 aagggtgatc gaggacccaa aggactacca ggacctcaag gccttcgggg tcctaaagga 961 gacaagggct tcgggatgcc aggtgcgcca ggtgtaaagg ggcctccagg gatgcacggc 1021 cctcccggcc ctgttggact gccaggagtg ggcaaaccag gagtgacagg cttccctggg 1081 ccccagggcc ccctgggaaa gccaggggct ccaggagaac ctgggccaca aggccctatt 1141 ggggtaccgg gggttcaagg acctcctggg atacccggaa ttggaaagcc aggccaggat 1201 gggatcccag gccagccagg atttccaggt ggcaaagggg agcaaggact gccagggcta 1261 ccaggacccc caggccttcc agggattggg aaaccaggct tcccaggacc caaaggtgac 1321 cggggcatgg gaggtgttcc tggggctctt ggaccaagag gggagaaagg accaataggt 1381 gccccaggaa tagggggtcc tccaggagag ccaggcctgc ctggaatccc aggtcctatg 1441 ggccctccag gtgctattgg ttttcctgga cccaaaggag aaggtgggat tgtagggcca 1501 caggggccac caggtcccaa gggtgagcca gggcttcaag gcttcccagg aaagccaggt 1561 ttccttggtg aagtagggcc tcctggcatg aggggtttgc caggtcccat agggcccaag 1621 ggggaagctg ggcaaaaagg tgtaccagga ctccctggtg ttccagggct tctcggacct 1681 aagggagagc caggaatccc aggggatcag ggtttacagg gccccccagg tatcccaggg 1741 attgggggcc ctagtggccc cattggacca cctgggattc caggccccaa aggggagccg 1801 ggcctcccag ggccccctgg gttccctggt atagggaaac ccggagtggc aggacttcat 1861 ggccccccag ggaagcctgg tgcccttggt cctcaaggcc agcctggcct tccaggaccc 1921 ccaggccctc caggacctcc aggaccccca gctgtgatgc cccctacacc accaccccag 1981 ggagagtatc tgccagatat ggggctggga attgatggcg tgaaaccccc ccatgcctac 2041 ggggctaaga aaggcaagaa tggagggcca gcctatgaga tgcctgcatt taccgccgag 2101 ctaaccgcac ctttcccacc ggtgggggcc ccagtgaagt ttaacaaact gctgtataac 2161 ggcagacaga actacaaccc gcagacaggc atcttcacct gtgaggtccc tggtgtctac 2221 tactttgcat accacgttca ctgcaagggg ggcaacgtgt gggttgctct attcaagaac 2281 aacgagcccg tgatgtacac gtacgacgag tacaaaaagg gcttcctgga ccaggcatct 2341 gggagtgcag tgctgctgct caggcccgga gaccgggtgt tcctccagat gccctcagaa 2401 caggctgcag gactgtatgc cgggcagtat gtccactcct ccttttcagg atatttattg 2461 tatcccatgt aaaaacaaaa aaacaaaaaa caaaaaaaaa aaaaaa //