LOCUS BC013416 1616 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens H2A histone family, member X, mRNA (cDNA clone
MGC:4703 IMAGE:3534359), complete cds.
ACCESSION BC013416
VERSION BC013416.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1616)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1616)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Nov 6, 2003 this sequence version replaced BC013416.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 11 Row: g Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..1616
/db_xref="H-InvDB:HIT000036261"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:4703 IMAGE:3534359"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1616
/gene="H2AFX"
/gene_synonym="H2A.X"
/gene_synonym="H2A/X"
/db_xref="GeneID:3014"
/db_xref="HGNC:HGNC:4739"
/db_xref="MIM:601772"
CDS 39..470
/gene="H2AFX"
/gene_synonym="H2A.X"
/gene_synonym="H2A/X"
/codon_start=1
/product="H2A histone family, member X"
/protein_id="AAH13416.1"
/db_xref="GeneID:3014"
/db_xref="HGNC:HGNC:4739"
/db_xref="MIM:601772"
/translation="MSGRGKTGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAERV
GAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVT
IAQGGVLPNIQAVLLPKKTSATVGPKAPSGGKKATQASQEY"
BASE COUNT 304 a 550 c 493 g 269 t
ORIGIN
1 gtttgagccg tcgtgcttca ccggtctacc tcgctagcat gtcgggccgc ggcaagactg
61 gcggcaaggc ccgcgccaag gccaagtcgc gctcgtcgcg cgccggcctc cagttcccag
121 tgggccgtgt acaccggctg ctgcggaagg gccactacgc cgagcgcgtt ggcgccggcg
181 cgccagtgta cctggcggca gtgctggagt acctcaccgc tgagatcctg gagctggcgg
241 gcaatgcggc ccgcgacaac aagaagacgc gaatcatccc ccgccacctg cagctggcca
301 tccgcaacga cgaggagctc aacaagctgc tgggcggcgt gacgatcgcc cagggaggcg
361 tcctgcccaa catccaggcc gtgctgctgc ccaagaagac cagcgccacc gtggggccga
421 aggcgccctc gggcggcaag aaggccaccc aggcctccca ggagtactaa gagggcccgc
481 gccgcggccg gccgccaggc ctccccatgc caccacaaag gcccttttaa gggccaccac
541 cgccctcatg gaaagagctg agccgcttca gactgcgggg caagcgggcc gcggctccct
601 tcccctcccc tcccctcgcc cgccttcgcc gcccggcctc gagtccccgc ccgcccccgc
661 tcctgtcccg caccgcctgc cgcgtcggcc tcgggccctg ccctgtccgc cgtccgccct
721 ccggtagggt tcgggccttc cggatgcggc ttgggcgctc ttcggggacc tccgtggcgc
781 ggaagacccg agcctgccgg ggggtggccg gcggcgccgc acctgcccgc ctcggcgttc
841 gtgactcagc cgccccatcc cgagtcgcta aggggctgcg gggaggccgc agcaccttct
901 ggaagacttg gccttccgct ctgacgcagg gccgaggtgg gcagtccagg ccgagaggcc
961 ggcggccctg aaggtgagtg aggccctcgg cagctgcagc cggggtgtct ggtacccccc
1021 cggcgtggtg cttagcccag gactttcaga cgcggccgct ggccgggagg ctttggtggg
1081 agagacgcga tcgctgattt cggtctggcg ccccttctgc ggccgggacc caggcctttc
1141 acatcagctc tccctccatc ttcattcata ggtctgcgct ggggccggga cgaagcactt
1201 ggtaacaggc acatcttcct cccgagtgac tgcctcctag gaggacattt aggggagggc
1261 agaggcctgc agtttggctt cacggctggc tatgtggaca gcaagagtcg ttttcgcgga
1321 agccgactgg cagccaggcc tgtcgggccc cccgacgccg ccccatttcc cttccagcaa
1381 actcaactcg gcaatccaag cacctagata ccagcacaag tcggttaatc cctgtctgga
1441 ctgagcctcc gttggcttct gaactggaat tctgcagcta acccttccac gactagaacc
1501 ttaggcattg gggagtttta gatggactaa ttttattaaa ggattgtttt ttttttaaaa
1561 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa
//