LOCUS BC013201 1745 bp mRNA linear HUM 03-AUG-2005
DEFINITION Homo sapiens proline-rich transmembrane protein 1, mRNA (cDNA clone
MGC:18030 IMAGE:3924575), complete cds.
ACCESSION BC013201
VERSION BC013201.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1745)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1745)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 26 Row: f Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..1745
/db_xref="H-InvDB:HIT000036179_09"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:18030 IMAGE:3924575"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1745
/gene="PRRT1"
/gene_synonym="NG5"
/db_xref="GeneID:80863"
CDS 186..863
/gene="PRRT1"
/gene_synonym="NG5"
/codon_start=1
/product="PRRT1 protein"
/protein_id="AAH13201.1"
/db_xref="GeneID:80863"
/translation="MPGTQTPAPAEDPHSGCRDPVPARPQACHPKSQETRFEGPLPPP
PPAAAAPPPPAPAQTAQAPGFVVPTHAGTVGTLPLGGYVAPGYPLQLQPCTAYVPVYP
VGTPYAGGTPGGTGVTSTLPPPPQGPGLALLEPRRPPHDYMPIAVLTTICCFWPTGII
AIFKAVQVRTALARGDMVSAEIASREARNFSFISLAVGIAAMVLCTILTVVIIIAAQH
HENYWDP"
BASE COUNT 325 a 636 c 443 g 341 t
ORIGIN
1 atctgactct gtggagcctg ggactggttt cagcgagagc ctctgtactg ctctgtagtc
61 tctgctagga catggacgaa aagggacgca gccgggagag cgactgcccc agtcccaccc
121 gcctcgcctg gtctagcctc cgtgtttcca tgacaactcc aaaggagccc aaactggggg
181 cttgaatgcc gggcacccag actccagcac cggccgagga cccccactcc ggctgcaggg
241 accctgtccc agcgagaccg caggcatgtc atccgaaaag tcaggagact cgcttcgagg
301 gcccacttcc cccgccgccg cccgctgccg ccgccccgcc cccgccggcg ccagcccaga
361 ctgcccaggc ccctggcttc gtggtgccca cgcacgcggg gactgtgggc acgctgccgc
421 tggggggcta cgtagcgccc ggataccccc tgcagctgca gccttgcact gcttacgtgc
481 cggtctaccc ggtgggcacg ccatatgcag gcgggacccc ggggggaaca ggagtgacct
541 ccactctccc cccgccgccc cagggcccag ggctggccct actggagccg aggcgcccgc
601 cacacgacta catgcccatc gcggtgctga ccaccatctg ttgcttctgg cctactggca
661 tcattgccat cttcaaggcc gtgcaggtgc gcacggcctt ggcccgcgga gacatggtgt
721 cggccgagat cgcttcacgc gaggcccgga acttctcctt catctccctg gccgtgggca
781 tcgcggccat ggtgctctgt accatcctca ccgtagtcat catcatcgcc gcgcagcacc
841 acgagaacta ctgggatccc taaaaacgcc cctggtccgg ccccactctg cgcccctcga
901 tctcccaggc tctttctgca gtcataccgc ggacccaatg ggcgccctgc acacccgttt
961 ctggggccgt cagacttgga tacatcgtaa actccgcctc cacggaacgt ctcgccttgc
1021 gagcaagctc ggaatccagt tcctcaggaa cccctccaaa acccacaccc ccagggacgc
1081 cgctttccgg gatcccggcc aaacgccgga ccctcagtcg ctccaggccc cctcaccctc
1141 aaagtgtagc gcccccaacc gagcaacctc ggtttggtcc ctaaaacccc gcctcctcta
1201 taagcaccgc cccagctctg acaaaacccc gcctccaggt cggcaggctc cgccttcttt
1261 tcttctccgc ggggtgattc agtccagtga ttgggtttgt ggctccaggc ctcgcccaca
1321 gacggacaga cccctccctt tcttccggca aaaggaccga gccctggggt agtaaggccc
1381 ccacactcct gttttttgca agtacatttt tgtccctcct ccacccaggt atctgcctat
1441 tttcttgcta atcccagaac ctttcctttt gcttttttta aggacatttg ggaagttcct
1501 ggtgtaggac ccttctccct gggataagaa acctgcctgt aaacgctctg taaatactcc
1561 cttccaccca tcccagcccc tgggcagccg ggcagaaggg aatccaggct atggacctcc
1621 caagtccccg ctccccgctc ccctcggcgg ccccgccttg ttctgatctg tgtgtgagtg
1681 tgtgtgaact tctgaaagac aatattaaag agacttagtt gatttaaaaa aaaaaaaaaa
1741 aaaaa
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