LOCUS BC013149 2040 bp mRNA linear HUM 11-DEC-2003
DEFINITION Homo sapiens solute carrier family 27 (fatty acid transporter),
member 1, mRNA (cDNA clone IMAGE:3917549), partial cds.
ACCESSION BC013149
VERSION BC013149.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2040)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2040)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 26 Row: a Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..2040
/db_xref="H-InvDB:HIT000088020"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3917549"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..2040
/gene="SLC27A1"
/gene_synonym="FATP"
/gene_synonym="FATP1"
/gene_synonym="MGC71751"
/db_xref="GeneID:376497"
/db_xref="MIM:600691"
CDS <1..724
/gene="SLC27A1"
/gene_synonym="FATP"
/gene_synonym="FATP1"
/gene_synonym="MGC71751"
/codon_start=2
/product="SLC27A1 protein"
/protein_id="AAH13149.1"
/db_xref="GeneID:376497"
/db_xref="MIM:600691"
/translation="PEFVGLWLGLAKAGMEAALLNVNLRREPLAFCLGTSGAKALIFG
GEMVAAVAEVSGHLGKSLIKFCSGDLGPEGILPDTHLLDPLLKEASTAPLAQIPSKGM
DDRLFYIYTSGTTGLPKAAIVVHSRYYRMAAFGHHAYRMQAADVLYDCLPLYHSAGNI
IGVGQCLIYGLTVVLRKKFSASRFWDDCIKYNCTWHGPSWTEKLEPQRNPCLSAALVP
LCLPPLPAFQPLSPSIPVPVWP"
misc_feature 2..586
/gene="SLC27A1"
/gene_synonym="FATP"
/gene_synonym="FATP1"
/gene_synonym="MGC71751"
/note="AMP-binding; Region: AMP-binding enzyme"
/db_xref="CDD:pfam00501"
BASE COUNT 338 a 663 c 555 g 484 t
ORIGIN
1 gccggagttc gtggggctgt ggctgggcct ggccaaggcg ggcatggagg ccgcgctgct
61 caacgtgaac ctgcggcgcg agcccctggc cttctgcctg ggcacctcgg gcgctaaggc
121 cctgatcttt ggaggagaaa tggtggcggc ggtggccgaa gtgagcgggc atctggggaa
181 aagtttgatc aagttctgct ctggagactt ggggcccgag ggcatcttgc cggacaccca
241 cctcctggac ccgctgctga aggaggcctc tactgccccc ttggcacaga tccccagcaa
301 gggcatggac gatcgtcttt tctacatcta cacgtcgggg accaccgggc tgcccaaggc
361 tgccattgtc gtgcacagca ggtactaccg catggcagcc ttcggccacc acgcctaccg
421 catgcaggcg gctgacgtgc tctatgactg cctgcccctg taccactcgg caggaaacat
481 catcggcgtg gggcagtgtc tcatctatgg gctgacagtc gtcctccgca agaaattctc
541 ggccagccgc ttctgggacg actgcatcaa gtacaactgt acctggcacg gcccatcctg
601 gactgagaaa ctggaacctc agaggaaccc gtgcctctct gctgccttgg tgcccctgtg
661 tctgcctcct ctccctgctt ttcagcctct gtctccttcc atccctgtcc ctgtctggcc
721 ttaactcttc cctctttttc ttttctttct ttctttcttt tttttttaag atagagtctc
781 actctgctgc ccgggctaga gtgcagtggt gggatctcgg ctcactgcaa cctctgcctc
841 ctggggttca agtgatcctc ccacctcagc ctcctgagta gctgggatta caggcacccg
901 ccaccacgtc cagctaattt ttatattttt agtagagacg gggtttcacc atgttggtca
961 ggctggtctt gaactcctga cctcaggtga tccgctggcc tcggcctccc agagtgctgg
1021 gattataggc gtgagcctct ggcccggcct ttcctttttc ctctcctctc ctgccgagag
1081 tggaacacac gtgtcctggg agctgcatct tgtgtagggt ccagctgctt ttggggactg
1141 caggaatcat ctcccctggg ccctggactc ggactggggc ctccccacct ccctctcggc
1201 tgtgccttac ggagccccaa tccaggcctc ctgtggctgt tgggttccag atgctgcagc
1261 tccatgtgac ttccaagcag gccctccgcc ctccctgctg aatggaggag ccgggggtcc
1321 cccaggccaa ctggaaaatc tcccaggcta ggccaattgc cttttgcact tccccgttcc
1381 tgtcacattt ccccagcccc accttcccct cctgatgccc tgaaagcttc cggaattgac
1441 tgtgaccact tggatgtcac cactgtcagc ccctgccttg atgtccccat ttagccatct
1501 ccatggagct cctgctggag ggccctgaac cctgcactgc gtggctgccc agccagctgc
1561 ctcctgtcct gggaggaggc ctcctgggtg tcctcatctg gtgtgtctac tggagggtcc
1621 cacaggagag gcagcagagg ggtcagggga ggtctcctgc cgggggttgg cctctcaagc
1681 ctcaggggtt ctagcctgtt gaatataccc cacctggtgg tggcccctcc gatgtcccca
1741 ctgatggctc tgacaccgtg ttggtggcga tgtcccagaa aatcccacca ggacggccca
1801 gacatcccta ctggcttcgc tggtggctca tctcgaacat ccacgccagc ctttctgggg
1861 ccggccaccc aggccgcctg tccgtctgtc ctccctccag cagcaccccc tggcccctgg
1921 agtggtgggg ccatggcaag agacaccgtg gcgtctcatg tgaactttcc tgggcactgt
1981 ggttttattt cctaattgat ttaagaaata aacctgaaga ccgtcaaaaa aaaaaaaaaa
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