LOCUS BC013132 2243 bp mRNA linear HUM 06-JAN-2005
DEFINITION Homo sapiens ganglioside induced differentiation associated protein
2, mRNA (cDNA clone MGC:4972 IMAGE:3448678), complete cds.
ACCESSION BC013132
VERSION BC013132.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2243)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2243)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 3 Row: b Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 8923142
This clone grew slowly and was rescued by PCR.
FEATURES Location/Qualifiers
source 1..2243
/db_xref="H-InvDB:HIT000036141"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:4972 IMAGE:3448678"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_10"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2243
/gene="GDAP2"
/gene_synonym="dJ776P7.1"
/gene_synonym="FLJ20142"
/db_xref="GeneID:54834"
CDS 183..1673
/gene="GDAP2"
/gene_synonym="dJ776P7.1"
/gene_synonym="FLJ20142"
/codon_start=1
/product="GDAP2 protein"
/protein_id="AAH13132.1"
/db_xref="GeneID:54834"
/translation="MDPLGAPSQFVDVDTLPSWGDSCQDELNSSDTTAEIFQEDTVRS
PFLYNKDVNGKVVLWKGDVALLNCTAIVNTSNESLTDKNPVSESIFMLAGPDLKEDLQ
KLKGCRTGEAKLTKGFNLAARFIIHTVGPKYKSRYRTAAESSLYSCYRNVLQLAKEQS
MSSVGFCVINSAKRGYPLEDATHIALRTVRRFLEIHGETIEKVVFAVSDLEEGTYQKL
LPLYFPRSLKEENRSLPYLPADIGNAEGEPVVPERQIRISEKPGAPEDNQEEEDEGLG
VDLSFIGSHAFARMEGDIDKQRKLILQGQLSEAALQKQHQRNYNRWLCQARSEDLSDI
ASLKALYQTGVDNCGRTVMVVVGRNIPVTLIDMDKALLYFIHVMDHIAVKEYVLVYFH
TLTSEYNHLDSDFLKKLYDVVDVKYKRNLKAVYFVHPTFRSKVSTWFFTTFSVSGLKD
KIHHVDSLHQLFSAISPEQIDFPPFVLEYDARVRSTRSSPSPGMVY"
BASE COUNT 668 a 451 c 465 g 659 t
ORIGIN
1 gactcgccgt actcggcgcg ctcctgctga gggtcgccgg agatgtcgct cggccgcctt
61 ctaccaggag cctgatccgt gccgcccgcc gcccggatgg gaccaccaga gtgctctaaa
121 gtctccagtg aatattgaat tgctgaggat tttgggaaaa gacaaatcaa agttcccatt
181 ccatggatcc cttaggtgca ccttcccagt ttgtggatgt ggatacacta ccaagctggg
241 gtgactcatg ccaagatgaa ttaaattcct ctgatactac agctgaaata tttcaggaag
301 acactgttcg atcacctttt ctttataata aggacgtcaa tggaaaagtg gttctttgga
361 aaggagatgt ggcattactg aactgtacag ccattgtgaa taccagcaat gaaagtctca
421 cagataagaa tcctgtgtca gaaagtatct tcatgcttgc agggcctgat ttgaaggaag
481 atctccagaa acttaaaggg tgccgaacag gtgaagcaaa attgacaaaa ggattcaatc
541 tagctgcccg gttcatcatt cacacagtgg gacctaaata taaaagccgc tatcgcacag
601 cagctgagag ttccctttat agctgctaca gaaacgtact tcaactagca aaagagcagt
661 caatgtcttc tgttggcttc tgtgtcatca attctgcaaa acgtggttat cctttagagg
721 atgcaacaca catagcactt cgcactgtaa gaagattcct agagattcat ggggaaacca
781 ttgaaaaagt agtatttgct gtctctgatc ttgaagaggg tacttaccaa aagctgctac
841 ctctctactt cccaaggtca ttaaaagagg agaatcgatc attgccctac ctacctgcag
901 atattggaaa tgcagaaggg gagcctgtgg tacctgaacg acagattaga ataagtgaga
961 aacctggtgc tccagaagat aaccaagaag aggaggatga aggcttggga gttgatctct
1021 ctttcattgg ctctcatgct tttgctcgaa tggaaggaga tattgacaag caaagaaaac
1081 tgatccttca gggacaatta tcagaggcag ctctgcagaa gcagcatcaa agaaattata
1141 atcgctggtt atgtcaagca agatctgagg atctgtctga tattgcttct ctaaaagcct
1201 tataccaaac aggtgttgat aactgtggtc gaacagtgat ggtggtagtt ggaagaaaca
1261 ttcctgtaac attaatagat atggacaagg ctctcttata tttcattcat gtaatggatc
1321 acattgctgt gaaggagtat gtattagtgt attttcacac cctgaccagc gaatacaatc
1381 acctggactc cgacttcctg aagaaactct acgatgttgt tgatgtcaag tacaagagga
1441 atttgaaggc tgtttatttt gtacatccca catttcgttc aaaggtgtca acatggtttt
1501 ttaccacctt ttctgtctca ggactgaagg acaaaatcca ccatgtggac agcctccacc
1561 agctgttttc tgccatatca ccagaacaga ttgactttcc tccttttgtc cttgaatatg
1621 atgccagggt aagaagtacc agaagttctc cctcacctgg tatggtatat taactgttct
1681 atagagcagc acttacgagc acaacatcct gtcattacca gatattaatg taaattagtg
1741 agtcttaata aacttggtaa tatcatttaa catactttcc ctatgataac tttaggaaaa
1801 ggatttgtcc caagagaggc attttctcca gataaacgtt tcagtgggag atctctctgc
1861 tgtgagttca gaaccaattt tcgtttgtat tgtaagtttt ctaccatatt taaaacagat
1921 acctctgcct aattttctta agattgaatg gctttccatc tacacagagc cagaagaatt
1981 tattggtgat cacttttaga attaattgca aatcatgtgg cctatctcag tagtctttac
2041 cctgctaaaa gtttcattta tctaaaaggt tgtataatgt ttttaagagc atcatctgat
2101 aatattattg ttgttattta tagatgcgtt tatggatctg ttacataagc actagtcaca
2161 ggactactcg tgaatttcat caatttattc tattgtgttt attcatgata tcaccttagt
2221 aatttttgaa aaaaaaaaaa aaa
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